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In the clustering process, some groups may have a large number of sequences, which do not have much impact on the whole analysis, but will occupy a large amount of computing resources. Can you set a p…
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Good work and a useful tool for gene fusions!
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Hi team,
I found your isonform output fasta file is not a standard format with `>` line as header. And there are lots of empty files in the isonform fodler such as
```
(base) [yan.a@vc7-shared i…
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EVALUATE THE OBJECTIVE OF USING GET_HOMOLOGUES (Does it do the same as Roary? Ot gould be easier to use Roary)
1) The questions should be something that the student could be asking, and the tool th…
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Dear all,
run_dbcan version:
Based on commit https://github.com/linnabrown/run_dbcan/commit/f3dd111a9eaf552cdca14f4c8db06baabaa1f2f8, we cloned the repo and built the Docker image from https://git…
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Hi there!
I am trying to use NGSpeciesID with some custom parameters but I am not sure if maybe I am doing something wrong... here my command:
`NGSpeciesID --consensus --t 24 --fastq fastq_pass.fa…
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Hello,
I've run BiG-MAP to identify the gene clusters in some microbiome samples comparing health and disease.
There seem to be interesting patterns in my dataset of particular gene cluster type…
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From the file in issue #7 [MorphMap_gene_gene_scoring_data_with_CRISPR.xlsx](https://github.com/broadinstitute/2023_12_JUMP_data_only_vignettes/files/13844874/MorphMap_gene_gene_scoring_data_with_CRI…
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Hi,
I have installed PlasX as indicated (deps via conda) but it always crashes when I run `search_de_novo_families`. This happens after MMSeqs2 runs (no problem there). I have tested changing several…
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**Anna Greka** - Anne emailed (who works on ion channels) to see if she knows someone to talk with - Dec 15 https://mail.google.com/mail/u/0/#sent/KtbxLzfphpSXKvqjLksXdBkZFbLTKPBNnB
**Eitan Hoch** …