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**Describe the problem**
TF-target interaction is a missing opportunity as Multi-Instance Prediction.
**Describe the solution you'd like**
SCENIC+ / pySCENIC already has a well described resou…
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The required cisTarget databases and scripts to construct gene regulatory network can be downloaded [here](https://
figshare.com/articles/dataset/Auxiliary_data_and_codes_for_scPlant/23498402)，but th…
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I ran the GrnBoost2 algorithm on my bulk transcriptomics data and now want to predict regulon using cisTarget.
My code raised "could not convert string to float: " error.
ADJACENCIES_FNAME = "../i…
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# Contribution Guidelines
1. **Initial Setup**
- Clone the repository: `git clone `
2. **Update Local Content**
- Ensure you’re up to date with the development branch:
```bash
git ch…
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when I try the Gene Regulatory Networks tutorial , the first step "results.ctl=compute.network(expr.data = expr.ctl,gene.names = gene.names)" reported an error:
Error: 'rowSort' is not an exported ob…
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Hello,
I am trying to run the grn step on a large dataset of 263159 cells and 14357 genes on an HPC cluster with 999 GB of memory and 16 cores. I tried increasing the cores, but it would cause memo…
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KINC outputs a "tidy" network that has edges containing two genes. Gene 1 is a "Source" edge and gene 2 is a "Target" edge.
The labels "Source" and "Target" imply causality, but KINC is not capable…
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>The rapid progress of gene expression profiling has facilitated the prosperity of recent biological studies in various fields, where gene expression data characterizes various cell conditions and reg…
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Hello, thank you for your convenient tools. I want to only focus on TFs regulating a exact set of genes and construct regulatory network on it. How can I do it? Is it right to use gene sets tpms expre…
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Hi, Yutong
Thanks for building this fantastic tool. I am trying to apply this tool to my projects. However, I am not familiar with algorithms. I have some questions about the application of this …