SystemsGenetics KINC issues

SystemsGenetics / KINC

Knowledge Independent Network Construction

MIT License

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issues

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How to extract KINC network with container?

#190 feltus opened 1 year ago
0
Palmetto install broken

#189 herber4 closed 1 year ago
2
Citations

#188 JohnHadish closed 1 year ago
0
Log file print line at start

#187 JohnHadish opened 1 year ago
0
A few updates to R and Python scripts.

#186 spficklin closed 2 years ago
1
Filtering

#185 spficklin closed 2 years ago
3
KINC 3D viewer can not read in non-csGCN KINC network

#184 JohnHadish opened 3 years ago
0
KINC 3D viewer attempts to read in p_value as character string

#183 JohnHadish opened 3 years ago
0
Post processing with KINC.R changes formatting

#182 JohnHadish opened 3 years ago
1
Additional Space prior to every positive correlation value

#181 JohnHadish opened 3 years ago
1
Need a "version" command

#180 JohnHadish opened 3 years ago
1
install issue

#179 spficklin opened 3 years ago
0
Philosophical thought about the use of "Source" and "Target" labels

#178 JohnHadish opened 3 years ago
4
Filtering by rank, top_n argument is confusing

#177 spficklin closed 3 years ago
1
Ask for visualization dependencies for KINC

#176 Irisqing closed 3 years ago
5
Consistency of --preout and --postout

#175 JohnHadish opened 4 years ago
1
Clarification on --minexpr and --nan values

#174 JohnHadish opened 4 years ago
1
Need consistency of what files are called

#173 JohnHadish opened 4 years ago
2
Docker update

#172 spficklin closed 3 years ago
5
Fix for ccm and cmx out of sync

#171 spficklin closed 4 years ago
6
Would be nice if we had a way to see version of kinc

#170 JohnHadish opened 4 years ago
0
Documentation should include uninstall command

#169 JohnHadish opened 4 years ago
0
Added plots for degree distribution and avg clustering coefficient

#168 spficklin closed 4 years ago
4
Viewer update

#167 spficklin closed 4 years ago
2
Hypergeometric test performs poorly for sub-categories.

#166 spficklin closed 4 years ago
3
Idea to Speed Similarity GMM Step

#165 spficklin opened 4 years ago
0
Added v3.4.2 build to Dockerfile

#164 spficklin closed 4 years ago
1
Update dockerfile

#163 bentsherman closed 4 years ago
1
Moved help text so --help argument is useful

#162 spficklin closed 4 years ago
1
Cond test power

#161 spficklin closed 4 years ago
0
Na fixes

#160 spficklin closed 4 years ago
0
KINC 3D viewer mangles TTY

#159 JohnHadish closed 4 years ago
1
Kinc 3D viewer requires that the first column of the amx be labled "Sample"

#158 JohnHadish opened 4 years ago
4
Not sure why cmx and ccm are out of sync

#157 JohnHadish opened 4 years ago
4
Visualization Tool Transivity

#156 JohnHadish closed 4 years ago
2
kinc-filter-rank.R `--top_n`

#155 JohnHadish closed 3 years ago
2
FilterBiasedEdges of kinc.R breaks if not enough observations

#154 JohnHadish opened 4 years ago
3
Fixes for too many missing values in a cluster

#153 spficklin closed 4 years ago
2
Seemingly random "Maximum" values

#152 JohnHadish opened 4 years ago
3
Documentation unclear on how KINC makes use of GPU

#151 JohnHadish closed 3 years ago
3
Adds a power analysis test for the cond-test regression test

#150 spficklin closed 4 years ago
2
filter-bias test overwrites input

#149 JohnHadish closed 4 years ago
1
filter-bias test results in error

#148 JohnHadish closed 4 years ago
3
Unknown segmentation fault at end of KINC extract

#147 JohnHadish opened 4 years ago
3
KINC extract slow compute time

#146 JohnHadish opened 4 years ago
3
Create and Integrate Power-analysis with cond-test

#145 JohnHadish closed 4 years ago
2
Integrate Power-analysis with similarity

#144 JohnHadish opened 4 years ago
2
Fixed bug with tidy format rearrangement.

#143 spficklin closed 4 years ago
1
Bug in refactoring of Extract classes

#142 spficklin closed 4 years ago
1
undocumented amx `NA` threshold

#141 JohnHadish closed 4 years ago
2