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Implement RNA-Sequence Analysis Workflow as per the following steps.
Quality assess and clean raw sequencing data
Align reads to a reference
Count the number of reads assigned to each contig/gene…
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When automatic gene sequencing is enabled and a tech with knowledge costs barely smaller than the knowledge cap is added to the research queue, the research will never be completed because the knowled…
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Hi, I would like to run nebula on a subset of genes. I would just subset the count matrix before feeding to nebula, but I have one concern.
In the paper, there is a term denoted as pi, that repr…
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Hi,
I have Nanopore sequencing data for the 16s gene of microbioal communities. Can dada2 be used for this type of sequencing data, and if not, is it in development? Thanks!
Best wishes,
Carla …
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I think the local filenames of the GG 13.8 reference, used in the qp-target-sequencing plugin, is out of sync between qiita environment manager here:
https://github.com/qiita-spots/qiita/blob/57d1b14…
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Good day,
I am trying to figure out how is sequencing saturation calculated from the basic stats in Summary.csv, since the numbers do not add up.
In the following case:
Number of Reads,72704122
…
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Dear epiAneufinder team,
Thank you for your excellent work and for providing the community with this wonderful package. I have run epiAneufinder on our scATAC-seq dataset comprising 20 donors from …
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Hi @hxj5 , I have a question regarding 10X 5' scRNA-seq data.
For 5' sequencing, the read containing cell barcode and UMI contains part of the transcript https://kb.10xgenomics.com/hc/en-us/article…
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This issue covers 3 different types of CRISPR screens.
Related publications:
* https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443183/
* https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181115/
* htt…
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## *Repository Creation Request*
1. #### Coordinating Institute: Indian Institute of Technology Kharagpur
2. #### Approved Proposal: [Plant Metabolic Engineering Lab](https://drive.google.com/fi…