-
STATUS: DRAFT
Use case:Queries that can unify Gene expression/function/markers whether they are proteins, genes or transcripts.
TBD:
- Do we simply unify proteins/transcripts/genes or do we ma…
-
Over the past few months many genes have been dropped from the GeneSummaries.tsv file on the CIViC Data Releases page.
The following genes were in the September release, but were missing from the …
-
Hi,
Scanpy/squidpy can plot mutliple genes at once and save as a image file. such as
`sc.pl.umap(adata, color=["genes1", "genes2", "genes3"], save="a.pdf")`
This is very convinient.
while spatial…
-
Send Jessie list of up/down regulated homeobox genes
should be species | tissue | homeobox type | gene name
1. get homeobox genes per species (separate files for each type)
2. run find_common.py (/bl…
-
Dear developers,
Thank you for this really cool tool. I am using another tool to profile eukaryotes and there I know how many marker genes were detected per species. This is also important for norm…
-
Dear professor,
I performed BUSTED analysis on 7,401 genes to identify convergent positively selected genes. Due to the species I selected for my study, I ended up with very few significant p-value…
-
It would be useful to be able to label some genes of interest in a genes plot.
The bokeh [LabelSet](https://docs.bokeh.org/en/latest/docs/reference/models/annotations.html#bokeh.models.LabelSet) f…
-
@rcannood already has the line of code that needs to be added. This is just so that we don't forget.
-
- [ ] Add a verbose tag to mapping to avoid printing out all the output from tree and especially hierarchical mapping.
- [ ] Make the off-target selection and subsetting components of buildPatchseqTa…
-
I’m working on reimplementing my https://github.com/jolespin/veba metagenomics software suite and was looking into lightweight alternatives to das tool. I already precompute the genes with pyrodigal …