-
I got the following report on Discord:
```
N: I got that, but what i am wondering is how the queen's egg, implanted in a baseliner and got inseminated by xenotype A, produced a worker with genes …
-
Hi,
Thanks for the nice tool!
I've been looking into using FLAMES for my gene/transcript quantification. I already have a customized pipeline for the demultiplexing/umi identification so I was l…
-
## Describe the bug
The current `feature_dataset_presence_matrix` only reports genes that have a total expression count > 0. Instead, it should report all genes that were listed in the original da…
-
Query: What genes are downed by Ruxolitinib?
PK: ab417e9e-cac8-45c8-a114-4f4d4514c038
We get results for JAK1, JAK2, and JAK3, but also at least "Janus Kinase 1" and "Janus Kinase 2".
It look…
-
I am performing a GO enrichment analysis using genes from the transcriptome as the reference universe, consisting of 23,761 genes. I then conducted an enrichGO analysis on my differentially expressed …
-
Hi @UCDNJJ ,
Regarding the cell type annotation table, I have two questions:
(1). In table "HMBA_Human_BG_annotation", you only provided marker genes for the level 4 cluster (Group). The marker ge…
-
Hi,
I have been using IRFinder for a while now and it has been very usefull for the detection of intron retention events in our sequencing data. But recently we were looking at BAM file in IGV and …
-
I think, in this part, top_genes and bottom_genes have some overlap. If you set nlabel ==20, and print the data of top_genes and bottom_genes, you can find the overlap.
top_genes % arrange(padj) …
-
Dear authors,
I attempted to filter genes based on variance using the following code:
> adata = sc.read_h5ad(expr_path)
> adata.var_names_make_unique()
> sc.pp.filter_cells(adata, …
-
Dear Shuye
I have successfully run the **plot_5parts_metagene** what I am observing in **heatmap** and **Ratio-over-Input_IP_bam_gene_matrix.tab** there are genes which does not have any enrichme…