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Hello,
I am trying to run the AAFTF pipeline to assemble several Pleurotus genomes (testing it on 1 genome only) and I thought to run it as a pipeline at first. I am getting this error below. Spad…
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Original message:
-------- Original Message --------
Subject: Re: [Denovoassembler-users] largest kmer-value?
Date: Sun, 17 Nov 2013 09:14:54 -0500
From: Hornung, Bastian bastian.hornung@wur.nl
To: d…
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Is falcon output, e.g., p_ctg.fa, ready to use for downstream genome annotation, like gene prediction or does it need Quiver to polish just like celera assembler? Thanks
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Hi,
I have some questions about pruning step (how heterozygous alleles be partitioned...) and input/output files.
1. What is the difference between collapsed regions and chimeric contigs in prunin…
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Here is the list of the programs I would need to have installed on the Amazon computers the students will use for my practical on genome assembly (Wednesday 1st June):
- BioPieces (https://github.com/…
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In my assembler `shovill` i estimate the genome size from kmer frequencies and use that to subsample the reads to a fixed coverage (100x) much like rasusa does:
https://github.com/tseemann/shovill/…
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Thank you for the nice and very efficient assembler.
I assembled a highly heterozygous genome and hifiasm did very well separating primary and haplotigs (p_ctg size is only a bit larger than the ex…
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We used MASURCA 3.2.6 for genome assembly but found no fasta file for contig sequences at the end. Only final.genome.scf.fasta appeared in the CA folder. Is this normal? Below is the content from the …
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I recently used Novoplasty to assemble the mitogenome from short read data of _Microtonus aethiopoides_ ecotypes. Although the process completed successfully, it did not produce any contigs. I initial…
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I appreciate your developing a fast and good assembler and following up the issues here. We are currently working on animal genomes of >4Gb with high abundance (>60%) of repetitive elements.
Here …
sighe updated
3 years ago