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Hi there,
We are using hifi-asm to assemble human genome sequenced on Pacbio Revio machine, the coverage of the sample is roughly 30X (may be lower though), we found that hifi-asm might miss one ha…
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Details:
http://permalink.gmane.org/gmane.science.biology.ray-genome-assembler/735
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
I am using funannotate 1.8.7
**Describe the bug**
Th…
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Here is the list of the programs I would need to have installed on the Amazon computers the students will use for my practical on genome assembly (Wednesday 1st June):
- BioPieces (https://github.com/…
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We used MASURCA 3.2.6 for genome assembly but found no fasta file for contig sequences at the end. Only final.genome.scf.fasta appeared in the CA folder. Is this normal? Below is the content from the …
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Hi,
I have some questions about pruning step (how heterozygous alleles be partitioned...) and input/output files.
1. What is the difference between collapsed regions and chimeric contigs in prunin…
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Thank you for the nice and very efficient assembler.
I assembled a highly heterozygous genome and hifiasm did very well separating primary and haplotigs (p_ctg size is only a bit larger than the ex…
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Is falcon output, e.g., p_ctg.fa, ready to use for downstream genome annotation, like gene prediction or does it need Quiver to polish just like celera assembler? Thanks
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Dear @alekseyzimin,
I wonder if you have ever considered including within the masurca pipeline any software for the RNA scaffolding of the assembly generated. Sometimes, people assembling a genome wi…
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The bioconda-util.Recipe class cannot handle duplicate keys.
An example of a duplicated key is in the package Mira, where there is an url for linux and an url for mac:
```
package:
name: mira
…