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Dear Peter,
We were hoping that hapCUT2 would allow us to skip LongRanger to phase variants. However, we are running into some issues, and I would like to check back with you regarding some questio…
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**Description:**
Explore the implementation of a data visualisation layer to expand the functionality and usability of widgets. Below are the suggested widgets:
1. Target Cancer DepMap Widget.
2. Tar…
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Sample patient includes FHIR, DICOM, ECG, and genomics data.
https://registry.opendata.aws/synthea-coherent-data/
https://www.mdpi.com/2079-9292/11/8/1199
https://aws.amazon.com/blogs/industries/…
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currently only numbers and "NA"s are allowed.
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### Source Name
BioStudies ArrayExpress
### Source URL
https://www.ebi.ac.uk/biostudies/arrayexpress
### Source Description
The functional genomics data collection (ArrayExpress), store…
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Currently, for MSK IMPACT, we have mutations, CNAs and fusions/SVs, but we have many additional types of derived data generated by CMO.
- Mutational signatures
- HLA types
- HLA LOH
- Genomics-i…
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Dear Dev,
I am new user of TRUST4 on single cell TCR seq analysis, regardless, TCR seq could be successfully obtained using bulk RNAseq data.
I wonder, with my 3' 10x genomics GEX data (I have b…
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Hi! I'm quite new to bioinformatics and I'm running into an issue using krisp_vcf where I get the following error:
(py311) Janehol@bcsumx01:~/krisp$ krisp_vcf krisp_metadata.csv Race_1.masked.fa --…
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I want to convert 10x Genomics single cell data to AIRR format. Is it possible?
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From the vignette and by running the SCnorm command on 10x data that is heavily zero-inflated (sequenced to 85-90% saturation), i ran into the