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Greetings!
Do you have any plans on implementing the genotyping of the variants? Or if you recommend tool that could genotype the VCF output of nanomonsv.
Cheers!
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Hi,
When I genotype known SVs from a VCF, Sniffles2 raise a Fatal error:
```
Sniffles2 Error: Error parsing input VCF: Line 211: invalid literal for int() with base 10: '.' (Fatal error, exiting.…
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Dear Sirs,
I am trying to make HLA Genotyping for HLA-A, HLA-B, HLA-C, HLA-DRB1, HLA-DRB2 and HLA-DQA1. Please tell me where can I find the HLA reference files in VCF format, as it is required for …
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just copy logic from somewhere else
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Hello,
I have been able to produce very promising CNV calls with ExomeDepth, but now I would like to use the results to check the consistency in given trios (parents and child). Some CNV calls might …
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Hello, thanks very much for your previous answers. And I have another small question recently. Why gridss can not generate the genotypes of SVs (i.e., 0/1,1/1), and some other SV callers can give the …
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Hi!
Is it possible to extent CYP genotyping to include all genes in CPIC guidelines?
https://cpicpgx.org/guidelines/
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Hi,
I am using Bayestyper to genotype my yeast strains after the clustering step but I'm getting an assertion failure error. I ran `bayestyper genotype` with the --noise-genotyping parameter due to…
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Dear Jonas,
I read the paper and I've to congratulate, because is really interesting! I contact to you because I'm interested to use BayesTyper to genotype my samples. I've 808 samples (at 30X) whi…
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I have a large scale dataset of WXS .g.vcfs , I do not have the original FASTA files. I would like to genotype these .g.vcfs into vcfs. These vcfs will be used in downstream applications. The issue is…