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**Description**
Potential new hMPXV B.1.6.* lineage identified in Peru by the *Genomic Surveillance of the Instituto Nacional de Salud (INS-Peru)*. Lineage is defined by numerous mutations, deletio…
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There seems a lot of KP.2.18(T22N on T22795G branch) sub-branches emerging these days.
KP.2.18+C21654T,A22994G(S:S31F,K478E)
GISAID query: T22795G, A22994G, C21654T
GISAID query for S:G946E sub-b…
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S:D111N seems very common among KP.3.1.1 sub-lineages now.
MC.2+G21893A(S:D111N)
GISAID query: G21893A,C12616T,G24095T, -22272
No. of seqs: 10(USA 8(NJ,DE,PA) Canada 1(BC))
GISAID query for S:Q…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1867
KP.3.1.1+A25121C(S:N1187H)
GISAID query: A25121C, C12616T, A13121T
GISAID query for S:S46L branch: C21699T,C4551T (By @Fe…
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From branch 33 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
KP.2.5+C592T+C2377T, del21653_21655(Orf1a:N704K,S:S31del)
GISAID query: T592C,T2377G,A22115G
No. of seqs: …
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Hi there! Congrats on this work, it's amazing! We're currently doing some work looking at epistatic effects, and are hoping to build on the incredible work you folks have done with PyR0.
So far, w…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1666
GISAID reads this mutation as T21994C+del21998_22000, resulting in S:H146del instead of the S:Y144del for normal JN.1*s.
H…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1989
KP.3.1.1+C5512T+G23285T(S:A575S)
GISAID query: G23285T,C5512T,C12616T
No. of seqs: 39(Australia 1 Belgium 1 Canada 2(NL…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1840
XDV.1.5+C4683T,T15573C(Orf1a:A1473V)+C3686T, G25793A(Orf1a:H1141Y,Orf3a:R134H)+A8390G, C12854T, T21738C, C25671T(Orf1a:I270…
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Hi there,
Really excited to know this tool! Want to apply this pipeline to precess global contextual data from GISAID.
Question: How to prepare JSON dump from GISAID?