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https://www.youtube.com/watch?v=fCd6B5HRaZ8
https://www.youtube.com/watch?v=-7GK1HXwCtE&list=PLnzAhaRtwW9cpQjk7IMj6gGq7UMPOKuq9&index=1
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I note that [SAMN00205533](https://www.ebi.ac.uk/ena/browser/view/SAMN00205533) is not in the assembly-stats.tsv file. It's isolate (culture) sequence from the E. coli Long Term Evolution Experiment. …
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We use merged platform because adding RNA-Seq data require that the same platform is used for all the samples. This is unnecessary because ultimately these platforms get replaced by a generic expressi…
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In `seq_receive_library_pools.py`, newly created libraries for ingested pools do not belong to an experiment, and thus do not belong to a project. So when it comes time to generate the Illumina Runshe…
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I have nanopore long-reads from tumor (tumor only)
I also have SNP/indel variant calls from the same sample from illumina in both germline (normal) and tumor data
I want to try and get phasing inf…
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When the LAB exports illumina genotypes, they usually export them in the TOP-strand format.
Our pipeline expects this.
However, some of the data can be in another format,
## Check
Download the an…
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Is there a way to process single end reads with bacass? I am attempting to modify config files, and it would be amazing if you already had a solution in hand.
Best,
Emily
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Hi,
First of all, thank you for open sourcing DeepSomatic. Hope that it is going to be a useful tool for the community moving forward.
I am unable to reproduce the variant calling performance re…
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https://blog.yech.xyz/posts/illumina_sequencing_spec/
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Hello, I think there's a typo here:
https://github.com/WGLab/RepeatHMM/blob/b52cd31f883ab20694d22b5800c31c58f08c837e/bin/RepeatHMM_scripts/myGaussianMixtureModel.py#L143
I think commonOptions shou…