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Hi,
I received an error when attempting to perform krakenuniq-build on the refseq genomes.
This is the command I use:
./scripts/krakenuniq-build --db DBDIR-temp --kmer-len 31 --threads 10 --…
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I tried to extract reads with TID 3014784 using krakenuniq-extract-reads from KrakenUniq. According to the kraken uniq report, there are 1000 reads for 3014784, but 0 reads were extracted.
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Hello,
We want to run krakenuniq for datasets containing 100-200 samples of about 25-30M reads each.
As of now, **we are not able to successfully complete one run**, even when trying to use only…
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I am trying to run the following command to download the database. However, it generates the following package error but it is already in my system.
krakenuniq-download --db krakenuniq_db/ --thread…
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Dear Jennifer,
There is a new version of Kraken Classifier called KrakenUniq, which added the support for species level resolution (extended NCBI taxonomy ID tree), among other features.
Would i…
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Hi aMeta team!
Thanks for providing such a great ancient metagenome pipe. I found a very minor issue when downloading the krakendb from https://doi.org/10.17044/scilifelab.20518251. After wget, th…
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Hi, I got the following error
Error in rule Plot_Authentication_Score:
jobid: 15
input: results/AUTHENTICATION/.30012ssL12c.collapsed_done
output: results/overview_heatmap_scores.pdf
…
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Hello, I am new to KrakenUniq and I’d like to ask you a question.
I have obtained the KrakenUniq reports, and I want to import them in phyloseq. Do you authors suggest a best practice? Working with K…
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Dear Kraken2 developers,
thanks a lot for this fantastic software! I really appreciated adding the --report-minimizer-data flag (borrowed from KrakenUniq) to latest versions of Kraken2, because bre…
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Hi fbreitwieser ,The web site https://fbreitwieser.shinyapps.io/pavian/ can not support krakenuniq --report-file .Or i missed something. The formats are as follows.
% reads taxReads kmers dup cov t…