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After I had installed paper-qa
```
mamba create -n paperqa2 python=3.11
mamba activate paperqa2
git clone https://github.com/Future-House/paper-qa.git
cd paper-qa
pip install -e .
```
...a…
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Hello,
I have created a conda environment with (what I think) all the requisite programs with:
```
conda activate trans2express
mamba install -y diamond beautifulsoup4 biopython biothings_clie…
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Dear Oskar,
Due to no config/config.init.yaml via **mamba installation
mamba create -n binny_env
mamba activate binny_env
mamba create --prefix binny bioconda::binny
mamba deactivate**
So, I…
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I tried a de novo installation and test of charcoal. I used to use conda for this but moved to mamba over the last two years. Trying to run commands that *had* worked for a conda-based installation,…
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### System Info
Platform: M3 Max
OS: MacOS Sequoia
### Who can help?
_No response_
### Information
- [ ] The official example scripts
- [ ] My own modified scripts
### Tasks
- [ ] An officiall…
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I try to run the pipeline with the testdata and singularity:
`nextflow run main.nf -profile test,singularity`
However, i get this error, although i have permissions to write/read to /tmp/.
``…
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### Describe the issue
I am attempting to compile ONNX Runtime on the [LUMI](https://docs.lumi-supercomputer.eu/) supercomputer, a Cray system.
The configuration step is completed without any issue…
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### Version
25.02
### Which installation method(s) does this occur on?
_No response_
### Describe the bug.
When running ./docker/build_container_release.sh i enconter the the following issue on …
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**Are you using the latest release?**
Yes, I am using funannotate version v1.8.17, and the issue persists.
**Describe the bug**
While running the `funannotate predict` pipeline, I encountered…
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Dear omnipose team,
Thank you for making your tool available for the community!
Following your installation instructions I created a new environment :
```
mamba create -n omnipose-106 'pyth…