kevinjohncutler omnipose issues

kevinjohncutler / omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation

https://omnipose.readthedocs.io

Other

85 stars 29 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Contour missing

#101 WuJunxu opened 1 day ago
0
Kernal crashed when running the mono_channel_bact note book on iMAC with M3 chip

#100 MoZhou519 opened 5 days ago
1
Train an Omnipose model with 3-channel input images

#99 ThaoCao opened 1 week ago
1
3D Segmentation with Omnipose using 2D Cellpose models

#98 mrdandelion6 opened 1 week ago
1
Don't print message about labels when labels is None.

#97 tinevez closed 2 days ago
0
Omnipose crash with the --verbose flag when no objects are found in an image

#96 tinevez closed 2 days ago
0
Cellpose Extension 0.9.3 for QuPath 0.5.1 Training - Code ERROR

#95 marciaazevedo closed 2 days ago
1
GUI Preprocessing Discrepency

#94 YashM8 closed 2 days ago
1
Segmenting 3D Tiff with plantomni: RuntimeError: Expected output.numel() <= std::numeric_limits::max() to be true, but got false.

#93 mrdandelion6 opened 1 month ago
2
Issues with logging into the log file

#92 JB4Jaison opened 1 month ago
0
Flows to mask

#91 phisanti closed 2 days ago
2
Available pretrained models discrepancy

#90 lacan closed 2 days ago
1
GUI launch fail despite requirements satisfied

#89 JulianoGianlupi opened 2 months ago
0
Train new modet option in GUI not active

#88 danidean closed 1 month ago
1
Update settings.rst

#87 romainGuiet opened 2 months ago
0
Log the validation loss when using CLI while training an omnipose model

#86 lacan opened 2 months ago
1
Impossible to download pre-trained models

#85 TAspert closed 2 months ago
3
CellProfiler plugin issue

#84 tsmith1711 closed 2 months ago
3
Conversion of bact_fluor_omnitorch_0 model to .onnx throws error

#83 JensWendt closed 1 month ago
2
Testing the trained model failed on Windows

#82 sugan89 opened 3 months ago
0
macos omnipose gui make segmentation fault

#81 mxardre opened 3 months ago
2
Error: `ModuleNotFoundError: No module named 'aicsimageio'`

#80 ElpadoCan closed 3 months ago
1
can not download model

#79 romainGuiet closed 2 months ago
11
ImportError: cannot import name 'ifft' from 'scipy'

#78 romainGuiet opened 4 months ago
9
GPU support for Apple silicon

#77 phisanti closed 2 months ago
2
Omnipose Segmentation Issue: Merging Distinct Regions as a Single Object

#76 Ati-74 closed 2 months ago
1
Question regarding returning files with no masks found

#75 GloriaAlvarado opened 4 months ago
2
Return fields if compute_mask=False, and dependences

#74 yyang35 closed 5 months ago
1
Trained model does not work

#73 urtepuod opened 5 months ago
2
NameError with io.save_masks

#72 ZiyangCh3n closed 5 months ago
1
Kernel crashes when segmenting in 3D for some images but not others

#71 vhickl closed 5 months ago
6
reproducing pretrained model

#70 dojoh opened 5 months ago
3
Issue with Continuing Training on bact_phase_omni Model

#69 73Emilie closed 5 months ago
4
RuntimeError when attempting training with GPU

#68 vhickl closed 6 months ago
2
no images in --dir folder

#67 73Emilie closed 6 months ago
2
Examples mono_channel_bact jupyter kernel crashes

#66 tensorcoder closed 6 months ago
2
Kernel crashes when plotting segmentation results of specific image region

#65 Marco-J-K closed 6 months ago
2
Trying to fine tune a model but it fails. I need help and guidance.

#64 fsalfonzo opened 8 months ago
2
Setting up Omnipose with GPU support results in kernel crashes when cellpose_omni is imported

#63 Marco-J-K opened 8 months ago
4
I don't understand the formula for diameter in the paper. Could you provide a detailed explanation of its principles?

#62 FCgogogo closed 6 months ago
1
Omnipose not working on stacks

#61 smury opened 8 months ago
2
Using omnipose models in Matlab Cellpose integration

#60 smury opened 8 months ago
1
gui error: qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.

#59 JunMa11 opened 8 months ago
3
FileNotFound Error while training a new model

#58 ThaoCao opened 9 months ago
3
unrecognized arguments: --nchan

#57 bobfRT1 closed 10 months ago
2
Training cellpose-omni using the API

#56 Jolanda5 closed 9 months ago
12
GPU usage low for extended periods of time

#55 natelharrison closed 10 months ago
1
Loss not converging

#54 natelharrison closed 10 months ago
2
Cannot install omnipose with GUI

#53 bpavie closed 10 months ago
3
[Bug] Second right click not recognized when making new mask in GUI

#52 ebornet closed 10 months ago
3