-
Hi SourMash authors,
We recently used your tool to annotate our reads, assembled contigs, and assembled genomes, and found that if we pool all contigs into one fasta, we cannot see the annotate res…
-
Hi,
I have 70 Gb shotgun illumina PE data from 4 samples with 3 replicates.
I need your help regarding Running of metagenome-atlas for analysis:
How much RAM do I need? I have a workstation Dell …
-
Hello! I saw your recent preprint, "Scalable estimation of microbial co-occurrence networks with Variational Autoencoders" and I'm hopeful your method may solve my issues, but I wanted to touch base t…
-
Hi,
I'm assembling metagenomes from ancieant microbiome samples. I have successfully assembled genomes from almost all of my samples, but am struggling with two of them. One of the failures is givi…
-
Need to update. Current text from 2012:
There will be four key output from the EMP:
1. Gene Atlas (GA) is a centralized repository and database for all information acquired during this study. This re…
-
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.
rRNA and tRNA are thought to be difficult to be assembled from…
-
Hi Zhichao,
What should we take as the input for the parameter - -in-gn when we set **-rt metaT**? Or we don't need to use the parameter - -in-gn when taking the metatranscriptomic reads?
Best,
…
-
(copied from https://github.com/sourmash-bio/sourmash/issues/461#issuecomment-1993390314)
Hi Titus @ctb , I don't know whether I could ask the following questions related to this issue, anyway....
…
-
At the meeting @alexsign and Sandra brought up the issue of capturing strain IDs, e.g. for microbial strains or gene products from MAGs
@realmarcin from LBL can advise on this
-
Hi,
Thank you for your hard work on eggNOG, it is an excellent functional annotation tool! I wanted to ask a question that may be particular to how I am performing my analysis. I am essentially usi…