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Dear users, I wonder if I can use deepBGC with metagenomic samples? In the paper describing the software it is mentioned as a useful tool for this kind of data but I don't know if it is implemented in…
drelo updated
3 years ago
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Whenever the pipline finishes successfully writing a file intended for downstream consumption, I'd like it to append a line to a special "checkout" file denoting the last modification time and the rel…
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Hello Tang,
Can I use your pipeline to predict metabolome from Picrust2 predicted KO metagenomes for which I do not have any paired data?
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### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.
rRNA and tRNA are thought to be difficult to be assembled from…
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Dear Salmon developers,
I have assembled a metagenome and called the genes on it.
Would it be an appropriate use of salmon to use this as a transcript database to map my metatranscriptome to as …
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Run reads based analysis on metagenomes
aclum updated
1 month ago
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I thought this might be of interest to folks using sourmash. I am sitting on 80+ metagenomes from bats. We swabbed their external surfaces (i.e., furred surfaces, ears, wings and uropatagia). I ran so…
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Large metagenomes are taking as much as a day to upload.
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Hi,
Thanks for this pipeline! I am running it and having trouble with the predict_metagenomes.py step. When I the normal predict_traits.py command you recommend and then add the KEGG I get the fo…
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### Is your feature request related to a problem? Please describe
We go along the road of being precise by using ontology terms, but then dont provide the CURI when downloading metadata.
### Descr…