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kbaseapps
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GenomeFileUtil
MIT License
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[WIP] parse/validate genome before upload
#210
Xiangs18
opened
1 week ago
0
delete export_genome_features_protein_to_fasta from spec and recompile
#209
Xiangs18
closed
1 month ago
1
RE2022-272: Add a bulk version of genbank_to_genome in GFU
#208
Xiangs18
closed
1 month ago
13
RE2022-272: Update GenomeFileUtil to run in batch & parallelization 2
#207
Xiangs18
closed
5 months ago
1
Rerun 551481e
#206
Xiangs18
closed
5 months ago
1
Fix GFU test failure
#205
Xiangs18
closed
6 months ago
2
GHA fix
#204
Xiangs18
closed
6 months ago
2
Tests are failing but GHA passes
#203
Xiangs18
closed
6 months ago
3
RE2022-272: Update GenomeFileUtil to run in batch & parallelization 1
#202
Xiangs18
closed
5 months ago
17
Update kbase.yml
#201
scanon
closed
2 years ago
0
Update CODEOWNERS
#200
scanon
closed
2 years ago
1
Replace indexed based lookup with dictionary lookup
#199
scanon
closed
2 years ago
2
Uploading large metagenomes is very slow
#198
scanon
opened
2 years ago
2
Ptv1674 dup fix
#197
jkbaumohl
opened
2 years ago
1
return GTF file format for MetaGenome object
#196
Tianhao-Gu
opened
3 years ago
0
Ptv 1637
#195
jkbaumohl
closed
3 years ago
1
Ptv 1637 fix
#194
jkbaumohl
closed
3 years ago
5
updata kbase.yml and RELEASE_NOTES.md
#193
Yzm1234
closed
3 years ago
0
fixed a minor error in GenomeFileUtilImpl.py and updated the object name in update_taxon_assignments_test.py
#192
Yzm1234
closed
3 years ago
0
Fixed saving object to view_only workspace issue and genbank handle permission issue
#191
Yzm1234
closed
3 years ago
1
Fixed genbank handle permission issue
#190
Yzm1234
closed
3 years ago
0
Update test
#189
jayrbolton
closed
3 years ago
1
bumped version
#188
jkbaumohl
closed
3 years ago
0
Rename CHANGELOG.md to RELEASE_NOTES.md
#187
jayrbolton
closed
3 years ago
1
Fixed false ontology_ref requirment
#186
jkbaumohl
closed
3 years ago
3
Testing
#185
jsfillman
closed
4 years ago
0
Update Dependabot config file
#184
dependabot-preview[bot]
closed
4 years ago
0
Changing duplicate id behavior for Genbank files.
#183
slebras
closed
3 years ago
7
Update README.md
#182
jsfillman
closed
3 years ago
1
Update README.md
#181
jsfillman
closed
4 years ago
0
Dependabot couldn't find a requirements.txt for this project
#180
dependabot-preview[bot]
closed
4 years ago
0
iterating version for bug fix
#179
slebras
closed
4 years ago
0
ws obj + gff to genome or metagenome bug fix
#178
slebras
closed
4 years ago
0
Update taxon assignments method
#177
jayrbolton
closed
4 years ago
2
Metagenome exporters
#176
slebras
closed
4 years ago
2
Some reorganizing of the tests
#175
jayrbolton
closed
4 years ago
0
keyError: warnings fix for Metagenome upload
#174
slebras
closed
4 years ago
0
Bug fixes, new shorter metagenome tests/files
#173
slebras
closed
4 years ago
1
iterating version
#172
slebras
closed
4 years ago
0
Workspace Object + GFF -> Genome/Metagenome functions
#171
slebras
closed
4 years ago
0
[WIP] Use relation engine for taxonomy
#170
jayrbolton
closed
4 years ago
2
fixing .spec and fixing bug related to no logged warnings for metagenomes
#169
slebras
closed
4 years ago
1
Fix for Mycocosm issue.
#168
jkbaumohl
closed
5 years ago
0
Testing Mycocosm
#167
jkbaumohl
closed
5 years ago
0
more debugging
#166
jkbaumohl
closed
5 years ago
0
Mycocosm effort
#165
jkbaumohl
closed
5 years ago
0
Debugging name mycocosm name issue
#164
jkbaumohl
closed
5 years ago
0
back with names
#163
jkbaumohl
closed
5 years ago
0
Changes to see behavior for backup ids
#162
jkbaumohl
closed
5 years ago
0
Changes for GFF upload Mycocosm proteinId issue
#161
jkbaumohl
closed
5 years ago
0
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