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Hi,
I encountered an error when I used the test BAM for analysis. It can't be resolved. I'm worried. Please help me.
And our server does not have a GPU,The python version is v3.12,the code and e…
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It would be great to be able to export the smoothed methylation data to a `BigWig` format that can be visualised in a genome browser (such as IGV, USCS, etc.)
It should be easily done using the `expo…
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Hi @ArtRand,
The following command which I believe to have executed on identical files in the past (perhaps on 0.3.0) seem to produce the error below now:
```
modkit dmr multi \
-s methylat…
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Hi there,
I would like to apply OFF-PEAK to some targeted EM-seq data (obtained using the Twist Methylome Panel). However, since the tool was designed specifically for exome sequencing data, all ta…
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Hello MerenLab,
While at EBAME I was encouraged to open this discussion by @FlorianTrigodet and @ivagljiva, and bring it to @semiller10's attention.
DNA methylation is on the verge of constituti…
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Hi, I'd like to thank you for your excellent work!I am currently working on a project related to your research, and I find your dataset methylation_data.pkl extremely helpful.
To better understand …
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obsolete cell migration behavioral quality of a process, abnormal
obsolete obsolete polysome whole organism decreased amount, abnormal
obsolete obsolete DNA methylation on cytosine decreased occur…
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Hello,
I have added a simple code to perform feature selection in the Program function. To run this code, I need to add the MatrxStats package.
The code runs in my docker environment but fails in …
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### Ask away!
Hi! Quick question on extracting methylation data from aligned reads. Our raw bams have been methylation called already, so it seems like the easiest way to extract methylation informat…