-
Hi, is there any option for fastp to trim or masking low complexity region in nanopore reads? As I always see some low complexity reads as follows:
@147b5220-2abe-4d1f-9507-b7d278e33efa
ATGTGCTTCA…
-
Can DIPAN be used in long-read transcriptomics such as nanopore reads?
-
Hello,
I'm interested in using this tool, but before I go down the rabbit hole of installing this tool, I would like to know if it works with long read tech, such as nanopore? for example, skipping…
-
Dear all,
I obtained CNV results using nanopore reads (cov : ~50x, N50 : ~40kb).
However, there was big difference between results of qdnaseq and spectre as shown below.
qdnaseq : 4 CNVs
spectre…
-
Hi Gaetan,
Hope you've doing well since EBAME, I'm happy to see this tool gaining some attention.
I was wondering if you've formalized the maximum error rate tolerable by metaMDBG to function b…
-
### Description of feature
https://www.biorxiv.org/content/10.1101/2022.01.31.478527v1
FYI the preprint that @Midnighter linked used PacBio's snakemake workflow for HiFi/nanopore reads with MEGA…
-
I received processed nanopore data and wanted to see the overall quality of the final dataset.
However I have the feeling that the adapters are already removed from the dataset.
Is there a way to ru…
-
Review existing tools in the pipeline if they can take in Nanopore data. If not, find a suitable alternative for long reads.
-
Hi,
we have sequenced marine samples using the Nanopore sequencers and I am currently testing methods to assemble the resulting sequences. I just stumbled upon your article and would be very intere…
-
Dear VariantBam developers,
I ran the command `variant $bam -m 100 -o mini.bam -b` to obtain a maximum coverage of 50 along my sample, however when I visually inspected the result in the genome bro…