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Dear developer, I was trying to download the pep.all.fa files for the species “Conger conger” and “Gymnothorax javanicus” from the ensembl database. But I found that there are no relevant files for th…
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In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/corelib/test/test_trial_fail.cpp:38:
In file included from /wrkdirs/usr/ports/bi…
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As per link below, NCBI have changed the 'country' qualifier to 'geo_loc_name', which mean the `ncbi_byid()` function no longer parses the XML and produces a 'country' field.
[https://ncbiinsights.…
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The Dwc specifications says to separate multiple values by ` | ` `space pipe space`.
https://dwc.tdwg.org/list/#dwc_samplingProtocol
`the recommended best practice is to separate the values in a list…
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Hi,
I am just starting to use your package. I have list of bacteria I would like to look for in my samples. However, I did a test with a small test following the tutorial and found that the sapply f…
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FTP has been doing some weird things. This change will make for more awkward date parsing from files but hopefully should be more reliable.
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Provide hyperlink to same biosample/SRA record for metagenomes/metatranscriptomes
Priority - High
Urgency - High
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- [ ] #3105
- [x] Additionally we map ncbiGeoRegion we map to geoLocAdmin2, which is not correct as ncbiG…
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Getting `Error: Download error: stream error: stream ID 5; INTERNAL_ERROR; received from peer` from multiple hosts, can't get it to work from anywhere.
```
$ datasets download virus genome taxon 1…