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For #133 we use SRA as one of our sources. Optimizing our license for re-use would be greatly aided by having a summarized grade for NCBI's SRA.
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@TrStans606
(for de-novo telomere discovery)
Test data:
ERR2061611 through ERR2061624 and ERR2188722 through ERR21887226 are available from the European Nucleotide Archive.
The rest should be a…
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Hi,
I am wishing to try out the example tutorial at http://joey711.github.io/phyloseq-extensions/DESeq.html
But I am finding it difficult to access the Study 1457 (Kostic_colorectal_cancer_fusobacte…
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There are actually two public transcritomes.
1. De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech
Raw sequence reads were submitt…
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Need to download and start coassembly of data set suggested by Meren:
Here are the metagenomes:
https://www.ncbi.nlm.nih.gov/sra/?term=SRP093449
This archive contains FASTA files for every bi…
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Update the BWA-GATK examples data source instructions and attributions. The data that was used in this example was previously in pre-publication usage, but has been published/released. We need instruc…
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Examples:
-srr srr000218, srr000219
-srp srp000323
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### Publication and Data Information
Refer here for Pistacia transcriptome assembly. This issue will pertain only to the loading to the live site.
https://github.com/mestato/statonlabprivate/wiki/Pi…
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Home page: https://github.com/ncbi/sra-tools
Installation from source: https://github.com/ncbi/sra-tools/wiki/Building-and-Installing-from-Source
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per luiz:
we have a new champion! https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&acc=SRR21113412&display=metadata is the largest signature in wort, 4.1GB :joy:
trace.ncbi.nlm.…