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Dear Dr. Sergey,
As you suggested in 197th issue, I replaced -f with -q. I executed the below shell script in my workstation. Scaffold step was running for a long time, then I encountered following e…
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I have tried running scaffold a few times on a sample, and I keep getting an error. The details are below.
During scaffold, the following command failed with return code -11:
> > /opt/metAMOS/metAM…
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Hello, I am trying to align metagenomic sequences, when I run initPipeline with the following command I get the expected output:
`initPipeline -q -1 Unmapped.out.mate1 -d projectDir -i 300:800`
Pr…
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Title:
ISEScan Stuck in a Non-responsive State After Running for 30 Hours
Body:
I've been running the following command in ISEScan for about 30 hours, but the program seems to have entered a non-…
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When building infernal, if user makes a build dir that differs from the src dir and configures there before configuring at the top level (in `infernal/`) then the easel subdir of hmmer dir in the buil…
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I suppose this is an extremely unlikely usecase in the first place and i can circumvent this in my work, decided to write up anyway:
I have some 3-20 nucleotide long trna/mrna fragments sprinkled i…
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Dear HMMER team,
I wonder does HMMER support building a validate profile for alignment that is very long? For an alignment file that has each sequence size being 4.4 Megabase, the profile we built …
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In the documentation about `makehmmerdb`, it says "... is used to create a binary file from a DNA sequence file." Can it be used for protein databases ? I've tried running it with default parameters o…
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Hello!
It appears that your pHMMER Sequence Search service for the Mgnify database isn't working.
Neither manual search via website nor API.
The queue is stuck with above 6000 jobs and it's not goi…
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La función filter_hmmer en lugar de filtrar crea filas con todos los valores inicializados a NA.
Replicar:
```r
uniprot.url