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### Installation Type
Docker
### pVACtools Version / Docker Image
Docker container, version 4.4.1
### Python Version
_No response_
### Operating System
_No response_
### Descri…
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Congratulations on Your Open Source Release!
I'm excited to see your work on "SLAM: structure-aware lysine β-hydroxybutyrylation prediction with protein language model" available as an open-source re…
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Thanks for your wonderfull software. I'm fresh in protein-protein interaction analysis. And I have run all the scripts in the dscript/tests/test_commands.py. However, I still didn't know how to create…
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Thank you for your work.
When I run vadr 1.6.3 on this virus: https://www.ncbi.nlm.nih.gov/nuccore/KY933089 (fasta file)
I obtain nothing in the 'pass' tsv file.
In the 'fail' tsv file, I get t…
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This software is very impressive!
Is it possible to add a feature for direct upload of PDB files or ligand sdf/mol2 files for protein-ligand binding prediction or protein-proterin binding prediction…
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Hello, author:
I have installed all the necessary software according to the instructions, and then I want to use the protein sequence in the literature (https://pubmed.ncbi.nlm.nih.gov/39112275/) to…
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I am trying to predict the structure of a protein containing a flavin post-translational modification, where FMN is covalently bound to a threonine residue via its phosphate group.
I first tried i…
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Hi folks,
Hope this is a right place to ask.
[Alphafold server](https://alphafoldserver.com/) allows user input protein sequence up to 5,000 tokens. My system is a bit larger than this number, 7,207…
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**Original ticket**: https://humgenprojects.lumc.nl/trac/mutalyzer/ticket/109
**Original date**: 2012/07/27
**Original reporter**: _j DOT f DOT j DOT laros AND lumc DOT nl_
The genomic description NC…
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Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
anuC updated
2 months ago