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In my project, i want the features scrached from the surface of protein . Therefore, i wonder how can i get the features list
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Hi,
I am trying to visualize the electrostatic surface of several different kinds of molecules and some of them either contain polysaccharides (for example the protein MUC2, which is often O-glycosyl…
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Thank you for the tool!
any suggestions on how to reintegrate the surface protein staining data from CosMX (e.g CD45, panCK) after segmenting with proseg?
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Dear Dr Judemir Ribeiro,
I'm pretty interested in your recently published tool dr-sasa, which can be used to calculate solvent-accessible surface area (SASA).
In my study, I want to calculat…
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@Ruoqiao2020 Hi, thanks for developing this tool!
When I run SPIDER with my own seurat object, the output seemed strange that only 1000 features of my seurat object were retained but obviously these…
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I tried to use different ligands to dock with the proteins in the repo .According to the files in your examples, when I tried to dock with 2br1_protein.pdb and 2wtv_protein.pdb, it worked .But when I …
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There are at least two dozen bacterial sequences of concern that bind host plasminogen to their surfaces. This bound plasmin is generally converted to plasmin which can then mediate serum resistance f…
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Some options were defined in for using the model (retro-inhibition of sugars in Ag ; surfacic N vs surfacic proteins). The model should be recalibrated to work with last features only
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Dear Authors,
This is a really great work! Thank you!
I wonder whether this script can be used on single protein ? And how ?
BTW, I'm working on interaction between protein-DNA , should I re-train…
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I am working with APBS calculations on a set of interesting proteins. Briefly, what I want is an _explicit_ representation of the potential at the protein's solvent accessible surface area—that is the…