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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kathiwaury/immunogenViewer
Confirm the following …
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There's a growing ecosystem for handling protein structure in Julia, including two visualization packages https://github.com/MurrellGroup/ProtPlot.jl and https://github.com/BioJulia/BioMakie.jl, neith…
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See https://viz.stjude.cloud/st-jude-childrens-research-hospital/visualization/mutational-landscape-in-relapsed-pediatric-acute-lymphoblastic-leukemia-displayed-in-pairs-by-diagnosis~485 and click on …
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Are the methods to plot the UMAP of the metagenomics dataset available?
I would like to generate a similar UMAP representation for about ~200,000 protein structures.
Any ideas where to start? Th…
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ModuleDefinition view should show interactions, could be part of the visualization ultimately. Could begin by adding interactions to the display list, abstracting away the proteins.
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## EUKulele Fails on "Performing taxonomic visualization steps..."
Running EUKulele on the HPC results in a failed run, likely at the taxonomic estimation step. Here is the tail of the batch run ou…
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- [ ] visualization for occurance along linear feature (ex indicating position of motifs along multiple proteins)
- using relative position to start site coords (ie 1 -> N)
## Interesting tools
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I was able to fix the output PDB files according to #10 to get visuals that look more like proteins. However, when combining the ligand and receptor PDBs, the ligand and receptor appear to have overl…
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Hi, I'm using alphafold2 to predict my protein structure. I found the result models always different no matter for x y z coordinates or plddt even I used the exactly same command line and didn't chang…
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Hi Liza,
I noticed when trying to create a W&B table visualization for the entire dataset that converting the pickle files into pdbs reveals multiple bugs.
Firstly, I got a "UnpicklingError: un…