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Hi !
I get this error sometimes for species with few genomes, I know that the recommended is 15 genomes at least, but I'm trying to get a distribution of the gamma tendency to decide at what point …
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I want to rarefy my samples to the first quartile.
i don't understand how `mp_cal_rarecurve()` works with this?
```
mouse.time.mpse %%
mp_cal_rarecurve(
.abundance = RareAbundance,
…
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it would make it easier for users to compute the non-spatial sampled based rarefaction curve if they only have to input the reference density and not the argument `dens_ratio` which is the ratio of t…
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**Improvement Description**
A forum user [suggested](https://forum.qiime2.org/t/seeding-the-rarefaction-algorithm/76) that we add support for seeding rarefaction, which is an interesting idea for sup…
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- [ ] smooth out sSBR by averaging it over at a minimum 20 runs. Currently the sSBR looks very jagged which largely reflects the particulars of the random walk that it took in sampling. By doing this …
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hello
thank you for all these great tools.
would it be possible to generate rarefaction curve to assess sampling depth (e.g. by subsampling data without replacement at XXX sequence increments, and…
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I noticed that it is a little tricky for users to calculate individual-based rarefaction curves at the site level. By that, I mean the basic functionality of the vegan function `rarefy()`, where you i…
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Hi,SourceTracker team,
I used my otu_table and the corresponding map-file to run the code
`sourcetracker2 gibbs -i otu_table.biom -m map-file.txt -o try1/`
And an error raised:
**ValueError: Inva…
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Hello-
I just wanted to make a note of two slight bugs I found while doing rarefaction analysis:
1. The script make_file_for_subsampling_from_collapsed.py doesn't work when the --include_single_…