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Hi, I'd like to try this tool out but am wondering how to format the infernal, cove, or text files properly. It appears that at one point there may have been an Appendix section in the readme, but I'm…
byee4 updated
4 months ago
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- 3 virus grps
1. reference
2. redefining invertebrate rna virome data? Zika?
3. segmented, assembled (FMTV)
Zika (including raw), FMTV, study Holmes, Flaviref, Flavi all (deduplicate)
- q:…
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**Steps to Reproduce**
1. Launch “Ketcher” and switch to the Macromolecules module
2. Click on the “Open” button
3. Click on the “Paste from clipboard” button
4. Select the “Sequence” option and …
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Hi,
AptaSuite asks for using CapR for secondary structures prediction but this program calculates RNA folding. Do you have any suggestions how to involve DNA secondary structure prediction in AptaSu…
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Work to be done section:
-Multi-sequence compare tools from the broad institute.
IGV: https://software.broadinstitute.org/software/igv/download
Some good command line softwares you will inevit…
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This could take as input an alignment of functional RNA molecule sequences, and output a matrix of mutual information scores for all pairs of positions in the alignment. That matrix could be plotted a…
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Project: ENCODE
So - we are working with a new High Throughput Sequencing Assay: icSHAPE, that captures RNA secondary structure.
NTR: "icSHAPE"
Editor preferred term: "icSHAPE"
Alternative…
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long RNAs with no secondary structure do not provide an error or submit. error messages when given could give more information. can someone who is better with javascript tackle this one?
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Relative to https://github.com/mc2-center/data-models/issues/49 and https://github.com/mc2-center/data-models/pull/66
Draft of the MC2 data model dictionary, using GitHub pages deployment, is here:…
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Hello, I had a little question about your code~ After you get RNA secondary structures,how do you determined the exact elements i.e. S, M, H, I, B and E, which stand for stem,multiloop, hairpin loop,…