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Hello,
Thanks for this amazing tool.
Any recommendation on the best approach to take when one has multiple paired-end fastq files for the same sample? An example is the 1000 genome 30X WGS file…
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As TL I would like to understand why the cost code and platform columns are showing null for most plates.
**Acceptance Criteria**
- [ ] Compare rows that have valid cost code and platform results ag…
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some variants, when verified with Sanger sequencing, are not real. How do we effectively integrate this info into the database?
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**New term details**
```
Term name - sequencing technology used
Structured comment name - seq_method
Definition - The sequencing method used; e.g. Sanger, pyrosequencing, ABI-solid
Expected value…
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Hi sangeranalyseR team
A lot has changed since I last used the package. I worked through my own scripts using the functions @roblanf made originally in sangeranalyseR. Is there any way to use the f…
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1. Add new telomeric region to contigs
(are there 2 now?)
2. Do fixes small which are confirmed
http://www.sanger.ac.uk/Projects/S\_pombe/sequence\_updates.shtml
http://www.sanger.ac.uk/Project…
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We have downloaded some Illumina PE reads from SRA and we got the `CONTRADICT_FASTQ` error.
Both R1 and R2 were in Sanger+33 quality format. However we found in R1 that the first read has a quality s…
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Hi,
I incidentally poked over your project and I wonder why you keep track of `Average read depth` and of `Observed insert size`. The former would be better replaced with `Median read depth` and th…
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might it be possible to cite checklists the following way:
Instead of
2. Citation: The citation of the dataset sounds confusing to me. It says for example:
Citation: Balke, M., Panjaitan, R…