relipmoc skewer issues - Githubissues

relipmoc / skewer

MIT License

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issues

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MAX_PATH limits use with cromwell

#56 JenniferShelton opened 6 months ago
0
Restrict overmatching MACH ifdef to only trigger on OSX and Mach

#55 Zopolis4 opened 1 year ago
0
Read length distribution in log file

#54 MagdalenaFeldhahn opened 1 year ago
0
'is_invocable' error when compiling in Cygwin

#53 AlexSath opened 2 years ago
0
empty read pairs

#52 nick-youngblut opened 2 years ago
0
file extension

#51 jihunni closed 2 years ago
1
manual

#50 kkleinoros opened 3 years ago
0
Output file name

#49 lczech opened 3 years ago
0
Where is the binary?

#48 theo-allnutt-bioinformatics opened 5 years ago
2
Would be nice to include local ./configure option

#47 jennformatics opened 6 years ago
1
broken link to ART

#46 0xaf1f opened 6 years ago
0
Quality trimming on the 3' end

#45 royfrancis opened 6 years ago
0
Hard clip 5' for PE reads

#44 royfrancis opened 6 years ago
0
Set custom path for output

#43 royfrancis closed 6 years ago
1
Error in barcode dispatch after trimming

#42 cbligaard opened 7 years ago
0
Why are there more untrimmed reads after decreasing error rate allowed?

#41 qslin opened 7 years ago
0
add manual from sourceforge

#40 DSLituiev opened 7 years ago
0
Paired-end mode : Read1 quality revision

#39 hubert93 opened 7 years ago
0
Nextera Adapters

#38 ATpoint closed 7 years ago
0
Adapters file must end by a new line?

#37 Isoobel opened 8 years ago
0
Empty sequence in output file

#36 Isoobel opened 8 years ago
0
Discard non-clipped sequence after adapter clipping

#35 hioymaci opened 8 years ago
0
trimming beyond adapter?

#34 RichardCorbett opened 8 years ago
1
fixed a bug in Makefile making object compilation with linking

#33 vejnar opened 8 years ago
0
any mode is missing 5 prime adaptors

#32 jblachly opened 8 years ago
1
gzip compressed output reduces speed by two-thirds

#31 jblachly opened 8 years ago
1
gzip rsyncable error

#30 ta-cameron opened 8 years ago
1
--barcodecutR2 N option

#29 avilella opened 8 years ago
0
provide default value for bWriteMasked

#28 jdidion closed 8 years ago
1
Add summary of adapter trimming, similar to cutadapt (example attached)

#27 jdidion opened 8 years ago
1
Exit gracefully when requesting version

#26 dakl closed 8 years ago
1
Add option to hard-clip the 3' end of read(s)

#25 jdidion opened 8 years ago
0
Mis-classifying Sanger+33 FASTQ as Solexa+64

#24 tseemann opened 8 years ago
1
New optional output files, "fill with N's" option

#23 jdidion closed 8 years ago
0
Progress bar is > 100%

#22 tseemann opened 8 years ago
1
output interleaved fastQ format?

#21 macmanes opened 8 years ago
2
segfault on -m mp

#20 sklages closed 6 years ago
1
N's don't get removed, trimming read quality

#19 JustGitting opened 9 years ago
2
Create release on GitHub

#18 holtgrewe opened 9 years ago
9
Not trimming correctly even though perfect match present (example provided)

#17 andreas-wilm opened 9 years ago
2
Example command line for Nextera Paired-End data?

#16 tseemann closed 9 years ago
2
Support for CASAVA input/output file names

#15 enricoferrero opened 9 years ago
2
Clarification on quality filtering/trimming

#14 enricoferrero closed 9 years ago
2
Move -lrt argument to the end of gcc command line

#13 wltrimbl closed 8 years ago
0
quality encoding auto detection fails on PE files merged with SeqPrep

#12 andreas-wilm opened 9 years ago
3
Empty FASTQ sequences on input produce corrupt FASTQ output

#11 wltrimbl opened 9 years ago
0
Changed tests for FASTQ output from qual.n to com.n

#10 wltrimbl closed 8 years ago
3
Applefix

#9 wltrimbl closed 9 years ago
1
won't compile on mac os x

#8 dakl closed 9 years ago
4
Compilation issues

#7 StuntsPT opened 9 years ago
2