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I have been unable to have successful integration across 3 separate datasets with my reference data. Both the query and reference only contain T cells. My reference dataset was derived with TotalVI (i…
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Hi, Dongyuan! I have a question about generating scRNA-seq data using gaussian family.
When I generate scRNA-seq data with gaussian family like the code below
```
example_data
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Hi, thanks for your great work. I wonder if there are any options we can use for downloading all scrna-seq cancer database. I tried to click the all cancer option in the website, but the returned file…
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Hi，Dr.zhang
Does scDRS work on snRNA-seq or scATAC-seq data?
scDRS 可以在 snRNA-seq 或 scATAC-seq 数据上工作吗？
以下是我的理解， snRNA-seq可以，但scATAC-seq不行。
Here is my understanding, scDRS can run on snRNA-seq b…
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Dear Prof. Fan,
Thank you again for developing this useful package!
I encounted 'Error in shape[k]
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Dear support team,
I have a question related to the interpretation of TF activity using the scRNA-seq data.
Here is my initial result from the most variable TF activity in the data set:
 on scATAC-seq and scRNA-seq integration
2. Run similar workflow using Fetal Developmental Atlas data
2.1 Make sure we have…
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Hi,
I am going to use SCATS to analyze 10x scRNA-seq data. After running cellranger, I can only get one bam file containing many cells. How can I generate metafile for SCATS step2? Can you give an ex…