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**Priority**: high
I previously created maps of the freeform cell type annotations provided by the original scRNA-seq dataset authors onto standardised, ontology-aligned Cell Ontology IDs and names…
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Hi,
I am going to use SCATS to analyze 10x scRNA-seq data. After running cellranger, I can only get one bam file containing many cells. How can I generate metafile for SCATS step2? Can you give an ex…
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Hi Cytospace team!
I have encountered some problems where the code stuck at this correlation = (v2.T.dot(v1) - sums / n) / stds / n, staying there for over 24 hours. Another issue is the concurrent…
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### Task motivation
Gene Regulatory Network (GRN) inference is pivotal in systems biology, offering profound insights into the complex mechanisms that govern gene expression and cellular behavior. Th…
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Hi team,
In the Redeconve manual.ipynb, I noticed that you mentioned Redeconve can also be used for bulk RNA-seq deconvolution. Does this mean we can use scRNA as reference to deconvolute bulk RNA …
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Hello. Does this work for scRNA-seq data? What are the changes that can be made to make it working in scRNA-seq data if it is possible?
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Do you have a vignette tutorial code on how to use cTRAP on Seurat or scRNA-seq data please? Thank you!
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Hi there,
I have used BayesPrism to deconvolute my datasets utilizing reference data from a public database. My datasets consist entirely of human bone marrow mesenchymal stem cells and are not cance…
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Good afternoon,
I am having issues with GDCPrepare with the CPTAC-3 dataset for scRNA-seq data.
I have successfully downloaded the data with
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#Query the data
query.exp