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Hi, not an issue but will this tool work with bacterial transcriptome? I read through the manual and couldn't find an answer. Since bacterial species don't have introns will this program have any nega…
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Hi,
I'm using STAR to do an RNAseq analysis on Staphylococcus aureus sRNA.
The aligment is working, but during the maping I have this Fatal error:
Transcriptome.cpp:18:Transcriptome: exiting b…
Mpvrd updated
3 weeks ago
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Hi,
Thanks for the useful package you provided, I m trying to repeat your analysis on testdata so then I will use scFusion on my single cell RNA-seq ALL dataset to find fusion genes. I have an issu…
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v1.2.1
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No resp…
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Dear Team,
I notice that Transcriptome-wide association studies (TWAS) is not included in the project. I am wondering is there any scientific concern that TWAS is excluded?
Thanks,
Shichen…
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Use case implementation of FAIR Data Train Planning issue #2 'Identify (meta)data schemas from use cases)
mroos updated
3 weeks ago
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Hi,
I've been trying out m6anet on our RNA004 reads and I have a question about alignment. As a default, we tend to align our reads to the genome for isoform discovery. From what I noticed in the d…
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### Operating System
Other Linux (please specify below)
### Other Linux
Rocky Linux release 8.9
### Workflow Version
v1.2.1
### Workflow Execution
Command line (Cluster)
### Other workflow exe…
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### Ask away!
The pipeline has run successfully using `--kit 'visium:v1'` with `2.2.0` The output generated are as follows
```
config_stats.json
gene.expression.mito-per-cell.tsv
gene.expressi…
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Maybe I missed something in the documentation, but I could not find anything about the --transcriptome-file file format. I tried a gtf file, but got segmentation fault and no output in the log files.