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Hi!
Firstly thank you for the tool.
I try to use my gffcompare gtf output for my analysis. I have tried "/archive/yildize/alotaibi_lab/human_data/transdecoder/TransDecoder-TransDecoder-v5.5.0/util/g…
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When running load-into-counting on a badly formatted FASTA file, I get:
```
scripts/load-into-counting.py", line 111, in main
rparser = khmer.ReadParser(filename)
ValueError: Could not open reads…
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```
Hi,
I am trying to compile it on Gentoo Linux but it fails.
Second, the make process does not exit upon and error but silently continues.
Building MOSAIK for the following platform: linux
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Hi,
I successfully assembled an _A. thaliana_ genome for which I obtained two partially phased haplotypes of size 148.1 Mb (hap1) and 146.4 Mb (hap2), respectively. These files are in **.fasta** f…
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https://www.ncbi.nlm.nih.gov/genome/plasmids/154?
awk -F"\t" '{print $7}' genomes_plasmids.txt -- for genbank $7, for refseq $6
esearch -db nucleotide -query CP007178 | efetch -format fasta > te…
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Hey,
My name is Rotem from the Hebrew University, Israel.
Im using bamcoverage and noticed in the [none.bw] output files that the reads are decimal numbers instead of integers, I would love to know …
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I tried use fasta file from nanopore to polish my genome of ecoli with racon v1.3.1 here is my code
```bash
minimap2 ${draft_dir}/draft.fasta ${readpath}/reads.fasta > ONTmin_IT0.paf
time racon ${…
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Hi,
I tested using version 113 of VEP. Small VCF files work fine, but when I provide a larger VCF file with about 100,000 lines, the program is interrupted, showing numerous warnings: WARNING: “Trans…
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I seem to be getting different p-values for the AU test results using IQTree vs. when I use [CONSEL](https://github.com/shimo-lab/consel). I ran the IQTree AU test using the command:
`iqtree -s in…
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While running the default taxassign step, I kept getting the following error:
```
raise ApplicationError(return_code, str(self), stdout_str, stderr_str)
Bio.Application.ApplicationError: Non-zero…