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aitgon
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vtam
MIT License
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taxassign bug
#36
BanaIbrahim
opened
7 months ago
1
Issue with FilterRenkonen
#35
BanaIbrahim
closed
7 months ago
1
Suitability for ONT data?
#34
dgslos
opened
1 year ago
1
fix: pin the sqlalchemy version to 1
#33
Retenodus
opened
1 year ago
0
Getting ValueError when running taxassign with NCBI db
#32
MarionDFO
opened
1 year ago
2
sqlalchemy.exc.ArgumentError with latest sqlachemy version (v2.0.4)
#31
KevCaz
closed
1 year ago
1
coi_blast_db error
#30
meglecz
opened
2 years ago
1
Error make_known_occurrences
#29
meglecz
closed
2 years ago
2
modifications on rst file on the docs
#28
RaphaelHebert
closed
2 years ago
0
Develop
#27
RaphaelHebert
closed
2 years ago
0
Develop
#26
RaphaelHebert
closed
2 years ago
0
Develop
#25
RaphaelHebert
closed
2 years ago
1
github ci test py39
#24
aitgon
closed
2 years ago
1
Do not use 70% and 75% identity for taxassign
#23
meglecz
opened
2 years ago
0
Refine taxassign algo
#22
meglecz
opened
2 years ago
0
Variant sequences in double
#21
meglecz
opened
2 years ago
0
Random select merged reads
#20
meglecz
closed
2 years ago
0
compressed input for 'filter'
#19
meglecz
closed
2 years ago
0
sortreads: add option to make anchored/non-anchored search when trimming primers
#18
meglecz
closed
2 years ago
0
sortreads: add option to make anchored/non-anchored search when searching for tags (demultiplexing)
#17
meglecz
closed
2 years ago
0
sortreads: improve demultiplexing by searching for all tag combination in parallel
#16
meglecz
closed
2 years ago
0
Option for sortreads to check both strands
#15
meglecz
closed
2 years ago
0
compressed input/outputs for 'sortreads'
#14
meglecz
closed
2 years ago
0
Add parameter --fastq_maxdiffpct parameter for merge
#13
meglecz
opened
3 years ago
0
compressed input/output for 'merge'
#12
meglecz
closed
2 years ago
0
Intermittent error when using taxassign with ncbi_nt
#11
meglecz
opened
3 years ago
4
taxassign qcov_hsp_perc
#10
meglecz
opened
3 years ago
0
Pb of taxassign with ncbi nt database
#9
meglecz
closed
3 years ago
4
Error taxonomy
#8
meglecz
opened
3 years ago
5
Check sample names at the beginning of each command
#7
meglecz
opened
3 years ago
0
Pb vtam-0.1.21
#6
meglecz
closed
3 years ago
4
pb of memory in pool
#5
meglecz
opened
3 years ago
1
vtam incompatible with cutadapt==3.0
#4
aitgon
closed
3 years ago
2
Modify optimize_lfn_variant_replicate_specific.tsv and optimize_lfn_variant_specific.tsv
#3
meglecz
opened
3 years ago
0
Rename known_occurrences option in filter
#2
meglecz
opened
3 years ago
0
Make automatically a complete known_occurrences.tsv in filter
#1
meglecz
closed
2 years ago
2