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Dear Authors:
Here is my kmer distribution result from the most recent hifiasm v0.14.5 with default paras. I don't know why would this happen. Also, the N50 is not good either.
Please give some tip…
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Dear Brant,
I am working with a set of 67 samples in Linux. When I ran phyluce_assembly_assemblo_spades, computer worked for a whole week and I got an output for 65 samples (folders with contigs.fas…
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Hi,
Here is an error after I ran Unicycler. It seems like a bug of spades. Is there any way to solve this problem?
Thank you.
== Error == system call for: "['./SPAdes-3.15.4-Linux/bin/spade…
CS-CH updated
5 months ago
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Hi! I am encountering an error when running meryl, I used 20 CPU threads, 150GB of memory. It seems to be failing on the assertion `_blockPosition
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Hi, I am having some trouble to run the nonparametric bootstrap on my data. Could you help me? Below you find the error message.
rgufal@cln0:~/Documentos/ANDRE/AAF$ python2 BetaVersion/nonparametri…
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I have installed IGGPIPE in Ubuntu 14.04 lts workstation following the guides of IGGPIPE instructions. While running test data, it throws error. Following is the log file:
getSeqInfo file(s) for ge…
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Thank you for developing this pipeline.
I've noticed that for my allotetraploid species, while -k 15, -k 14 works fine, once I try -k 13 or -k 12, there are a lot of broken pipeline issues. A lot …
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Hello @andersgs I have run spades 3.14.1 included in shovill and I get constantly three types of warnings. Also mentioned in #19 . Are they benign or how should they be adressed?
Thanks
=== Erro…
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Hello @asl I have run spades 3.14.1 included in shovill and I get constantly three types of warnings. Are those coming because of previous tools used and are they benign or how should they be adressed…
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Hi,
I've built a custom LCA database (using signature and taxonomy information) and now I have a lca.json file.
I would like to extract "genus-specific" kmers (the discriminative kmers for each g…