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I changed the output of the functions `studies_find_studies` and `studies_find_trees`. Previously, these functions would only return the OTL identifiers for the studies and or trees that matched the s…
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Hi,
It looks quite odd to me that "axonemal dynein complex" is_a "cytoplasmic dynein complex".
I see that the term "axoneme part" is_a "cytoplasmic part", and perhaps this is part of the reason.
Ho…
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```
ben@u:~/git/graftM$ bin/graftM graft --graftm_package test/data/mcrA.gpkg/ --forward test/data/mcrA.gpkg/mcrA_1.1.fna test/data/mcrA.gpkg/mcrA_1.2.fna --output t --force; cat t/combined_count_tabl…
wwood updated
8 years ago
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Hi,
I read at that you are working on a way to assign taxonomy to reads with vsearch: https://github.com/torognes/swarm/issues/45 and https://github.com/torognes/vsearch/issues/34. What is the status…
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For input tree "pg_335_360":
```
((ott229542,ott348531),(ott625710,ott258235));
```
it is decomposed into:
```
1. subprob ott348529:
(ott258235,ott625710);
2. subprob ott42109:
(ott348529,ott534585…
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[Originally posted on GoogleCode (id 1917) on 2013-10-28]
(This is the template to report a data issue for Vascan. If you want to
report another issue, please change the template above.)
What is the…
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So far, the hardest part about writing the compiler for Alloy is naming it. As mentioned in issue #90, Alloy is already an existing language. I also said that I would change it by the time the languag…
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I downloaded Phylosift to try the software for the first time. It seems that one of the packages 'placer' isn't found even though I can see it in the 'bin' directory. Please what could be causing this…
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Phylosift/pplacer runs for several hours and never terminates on run_test2.sh. Works fine on reads, but not when run_test2 asm is used as input.
Working on fix but this test is deprecated and will be…
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I get the following message after installing:
Can't locate App/Cmd/Setup.pm in @INC (@INC contains: /home/localuser/Desktop/PhyloSift/bin/../lib /home/localuser/Desktop/PhyloSift/version-0.9902/lib/ /…