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New research shows that Pfizer & AstraZeneca are effective at reducing transmission rate, in addition to the intended use case of preventing symptomatic cases. Happy to open a PR that adds "Vaccinatio…
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Hi Metabuli team,
First of all, I would like to thank you for such an excellent tool, I really enjoy using it. I’m currently using Metabuli to classify my viral metagenome sequences, and I have bee…
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> Debido a que la vacuna Sinovac necesita una sola dosis, es posible que el formato cambie una vez que comience la vacunación con esta vacuna.
>
> No sabemos aún cómo el DEIS va a publicar ese datos…
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Dear developers,
Thanks so much for providing VIGOR4 which is a very convenient software for virus annotation, especially for SARS-CoV-2.
But can i suggest adding a new databse of coronavirus in v…
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Somewhere between 4756dcee and 967674e9, I made changes that had significant speed impacts :( The `sars-cov-2` dataset went down from 100 sequences/sec to < 1 seq/sec 😢 going to walk back those change…
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Description: BA.2.86.1/EG.5.1* (or XDT or XDL or EG.*), BA.2.86.1 Spike, EG.5.1 end.
Private mutations: Really private: C1779T, C2070T, C8802T
From BA.2.86.1: T11614C
Breakpoints: between nucleotid…
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I assume something like:
```
planemo run #workflow/github.com/iwc-workflows/sars-cov-2-pe-illumina-wgs-variant-calling/COVID-19-PE-WGS-ILLUMINA ...
```
Proposed by @wm75 some time ago.
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I have discovered that in this project it uses the table of variants that I keep up to date.
Yesterday I made a change to reflect the way the WHO calls variants that were VOC or VOI but are no long…
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Hi,
- I'm a bit lost on the parameters, particularly mu and nu that appear to be critical.
The clockrate is fixed to 0.0008/subs/site/year
- 155 sequences from December 2019 and January 202…
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Very good job!
As you probably know is now possibile to scrape data directly from the new ISS Dashboard
https://www.epicentro.iss.it/coronavirus/sars-cov-2-dashboard