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Hi,
I am using mashmap v3.1.3 and I noticed that the same alignment was reported multiple times in the output file. For example, here is the output for reference chromosome 21:
```
ptg000091l 86…
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Hello, I have a question about classify:why not use kraken2(ultrafast metagenomic sequence classification using exact alignments)? In pipeline,determine the taxonomy of each bin with the Classify_bin…
wfgui updated
3 years ago
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This warning is produced by `validate` even if the SEQ is set to `*`. The SAM spec explicitly states that it is ok for the SEQ to be `*` and that the lengths don't have to match:
> If not a ‘*’, the …
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Hi,
I've built a tree using a set of software tools and I would like to root the tree using iqtree2/UNREST. I tried running `iqtree2 -m 12.12 -s alignment.fasta -te tree.tre` but I get the followin…
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Currently, alignments are trimmed to remove alignment slop, then blocks are trimmed to reduce it even further. This isn't really necessary, because recoverable chains should be doing the same thing in…
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`chr11 58991970 Minda_17 N . PASS SVLEN=64429;SVTYPE=DEL;SUPP_VEC=PB_r_60,ONT_r_45,ILL_MantaDEL:2:57679:57680:0:0:0,PB_severus_DEL1144,PB_ID_48673_2,ONT_severus_DEL1245,ILL_gridss186fb_11621h,ILL_994…
jzook updated
4 weeks ago
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Place the best_x code one loop in (strand) as with sortmedna?
```
// search min_lis_gv reference sequences for alignments
if ( min_lis_gv > 0 )
{
best_x = new int32_t[strs]…
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User shall have the ability to view the specific BLAST search task results (regardless the task state, except `Searching`).
To view the results, user should click the task ID in the "History" sub-t…
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Hello, the speed of all-vs-all sequence alignment is very important for me with a large amount of data, I have the following two questions:
1: I have noticed that diamond has updated the second ver…
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Elapsed Time: 0.000000
Connected Components: 34
Ran the cactus core script.
Finished filling in the alignments for the flower
Created the poa alignments: 142 poa alignment blocks for flower
C…