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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/dunstone-a/multistateQTL
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Unable to run read10xVisiumWrapper function without specifying reference_gtf argument.
## Context
* We are trying to run the code here: https://github.com/LieberInstitute/spatial_DG_lifespan/bl…
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**Describe the bug**
while running tutorial code
da_results
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Hello,
I tried to run `escape.matrix`
```
#Defining Gene Set To Use:
GS
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I'm trying to analyze GeoMx data that I moved over from the GeoMx workflow. I'm unable to plot PCA plots... I think it might be due to incompatibility with current scater version? Not sure. Here's my …
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Apologies for opening another issue, normally renv doesn't give me so many problems.
I am not sure how I end up in this situation, but renv in a project worked ~well yesterday (as in #1948) but no…
llrs updated
3 months ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/william-hutchison/tidySpatialExperiment
Confirm t…
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When using TMM normalisation on a spatial experiment object using `geomxNorm()`, the `norm.factors` are stored in the metadata.
Later, when using `SE2DGEList()` to convert the spatial experiment ob…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/TrigosTeam/SPIAT
Confirm the following by editing…
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It'll be easier to run the spatial registration process in your own data if we have functions for doing something like https://github.com/LieberInstitute/HumanPilot/blob/master/Analysis/Layer_Guesses/…