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# Context
Two colocalisation steps defined in `genetics_etl` are failing to complete when running DAG with eqtlgen credible sets. This is a common problem that happend also multiple times when runnin…
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Laura Carroll has volunteered
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### Description of feature
When running the pipeline with host removal, I often find a reasonable proportion of the resulting bins still get classified by CAT as the host (in my case, *Quercus robur*…
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Hi David,
I really like your genomenotebook project.
Just wanted to let you know that I've been working on adding a bunch of features to it. The purpose is so that it can be used to compare stacks …
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I used Diamond and MEGAN to assign taxonomy for my contigs.
```
diamond blastx -d nrdb.dmnd -q final.contigs.part_001.fa \
-o final.contigs_graham_01.daa -F 15 --range-culling -f 100 \
-t ./ --thr…
XHe20 updated
8 months ago
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Hello, I've bumped into a contig error when doing partial diffusion of a PDB composed of chains 'A' and 'B'
When I want to keep fixed chain A but diffuse some residues in chain B by using this cont…
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```
$ aviary recover -a assembly_checkpointing_megahit_output/megahit/assembly_output/final.contigs.fa --binning-only --skip-binners rosella vamb -c ../data/ERR34*
...
[Thu Oct 31 06:44:25 2024]
l…
wwood updated
3 weeks ago
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Hi!
Thank you for the amazing tool! It's very helpful!!! Unfortunately, I am struggling with a question and can not find the right answer myself. I have Oxford Nanopore reads that I assemble with …
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Hey @kristyhoran
List of potential enhancements that could be useful to implement for bohra we have discussed.
1. make bohra compatible using a contigs only set of inputs - that way can be used f…
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Dear Mahul, I intend to use SVMU for calling variants between a reference and a newly sequenced strain of Drosophila. I have the contigs and also a scaffolded assembly for the same built from Illumina…