-
[Nextflow](https://www.nextflow.io) is a popular DSL for scientific workflows based on [Groovy](https://groovy-lang.org).
* Nextflow has an official syntax highlighter for Atom: https://github.com/ne…
-
## Bug report
When users try to run [this pipeline](https://github.com/sanger-bentley-group/GBS-Typer-sanger-nf) with Singularity, it works on Nextflow 22.10.7 and before, but fails on Nextflow 23…
-
Are there Nextflow schemas for these workflows? I'm attempting to run them through Nextflow Tower and I'd like to point to a schema file to population all the options in Tower.
-
Hi, I just tried to process my .scn files using the nextflow method.
First issue: the documentation says to run "nextflow run adamjtaylor/scn2ometiff ....." which didn't work. I was able to fix th…
-
The Nextflow pipeline run instructions can be simplified by using a conda environment file (`conda_env.yaml`):
```
name: sicelore-2.1
channels:
- bioconda
- conda-forge
- defaults
depen…
-
PR #95 made an environment variable that allows the user to write test results to a different directory. We've recently hit an issue where the testing input data may also need to be in a user-specifie…
-
### Description of the bug
ERROR ~ Error executing process > 'NFCORE_RAREDISEASE:RAREDISEASE:CALL_SNV:CALL_SNV_DEEPVARIANT:DEEPVARIANT (
earlycasualcaiman)' …
-
_Originally posted by @adamrtalbot in https://github.com/nextflow-io/nextflow/issues/3314#issuecomment-1836300135_
Now Managed Identities are supported by Nextflow (#4897), we should be able to mod…
-
### Description of feature
Hi, I couldn't run the pipeline on some smart-seq datasets which contains only single-end fastq files. I tried with two different samplesheets and get an error that fastq_2…
-
In python unit test, functions can be mocked so they returns certain values or data without going through the processes that takes long time, and only for the purpose of testing. So I'm thinking that …