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User submitted a request to Ronna:
I’m running into a weird issue across a few vestibular datasets, where there are two Ensembl IDs for “Nrxn2”. This is an issue for the utricular datasets I was ho…
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When I ran the tutorial of [Regulatory network analysis through intergrating scRNA-seq data and scATAC-seq data](https://jiang-junyao.github.io/IReNA/scATAC+scRNA), I can't found the file named P1_CM_…
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Hello,
Apologies for the broad title. I've come across this repo as I'm working on integrating read simulation into an internal testing library, at present via cython + wgsim. So I have a few quest…
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Hi, zqyhyunbin :+1:
It's a really good job,
I learn the code you supply and you may only give the QC code
How you combine the Bulk-seq with scRNA-seq is not clear
could you please tell me how yo…
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- [ ] loading speed
- [x] expose the whole `outs` folder ~~https://stackoverflow.com/questions/1156246/having-django-serve-downloadable-files~~
check every buttons.
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- [x] run10x for 10xAT…
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Hello, very powerful method to prediction CCC from scRNA-seq.
When I try to use the "li.mt.rank_aggregate", the CellChat run slowly.
Would you speed up the process based on GPU?
Thanks!
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Thanks for the great package. Wondering if it can be applied for 5' 10X scRNA-seq data?
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Hi,
Thank you for the nice work! I am trying to reproduce the STARmap simulation results of Figure 4, but the RCTD results I obtained are slightly different from what you shared in the folder Figur…
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1) possibility: add option not split out by strand. in a lot of experiments, the strand is not really important, it is basically random which strand you read from
2) possibility: investigate cases …
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@dsouz072 Let us upgrade to this version for current the Etv2 scRNA-seq anaysis and the heartmap projects.