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Hi @oushujun ,
I tried the EDTA pipeline on the yeast genome (Saccharomyces cerevisiae). I get TIRs and Helitrons that represent about 1% of the genome.
First, when I run RepeatMasker on the libra…
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Hi Jon,
I am trying to annotate a Mite genome using Funannotate. I wanted to update the busco database with "arthropoda", as currently it have only "dikarya". I ran the below command but still the …
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Hi team,
I am using your program in my master thesis development on Arabidopsis genome and I always get empty both .ref.bed and nonref.bed files. Is there any desired format of short reads to get …
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Hi,
I obtained mobster outputs with no issues.
I am wondering that how can I find the source element causing transposable insertion? Mobster outputs have no information about that. Namely, I wan…
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Hi,
First, I would like to thank you for this nice tool.
I am wondering about a sentence meaning mentioned on the GitHub page.
You wrote about a transposition event "the example transpositio…
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I want to align the reads of a bacterial genome (MG1363). I have set --genomesSAindexNbases to 10 and I have 16 GB RAM.
This is the command I use:
STAR --genomeDir MG1363/ --readFilesIn testR1.…
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Hi Jon,
I am using funannotate for my second genome now!
When I use the current version to do the annotate step, it complains `Annotation database data/eggnog.db not present. Use download_eggnog…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
A clear and concise descriptio…
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Hello Berthelier
Forgive me for dozens of questions, It's just that I want to make use of this tool as much as I can.
Since you were interested in potentially autonomous TEs in your study, and you…
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**Are you using the latest release?**
yes, installed via conda.
**Describe the bug**
Randomly silently die toward the end of the stages of the following:
Program Training-Method
augustus…