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It is sometimes useful to combine headers (particularly the reference sequence dictionaries) in order to write alignments from multiple input files to a single output file.
Suggestions for validat…
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The following workflow `https://github.com/genome/analysis-workflows/blob/master/definitions/pipelines/bisulfite.cwl` has a linked sub-workflow `https://github.com/genome/analysis-workflows/blob/maste…
ghost updated
4 years ago
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Hi TOAST team,
I am interested in curating the representative genomes for VOCs/VBMs. And according to your recent publication (Xiaoli, Lingzi, et al. "Benchmark datasets for SARS-CoV-2 surveillance…
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Dear Daehwan,
I stumbled across two cases (see below) where I am unclear about whether I either incorrectly interpret the tags or they are indeed inconsistent. Hisat2 version and invocation were:
``…
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Dear all,
I am using RiboDiPA 1.10.0 in R version 4.3.3, and when I run the wrapperFunction (RiboDiPA), it failed in the indexing step:
`Indexing`
`Data/Raw/RiboSeq/IMGN_B17/IMGN_B17_Riboseq_re…
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This is just to drop the idea. Tools like maker or funannotate pre-screen protein databases against the genome with diamond before starting to generate exonerate alignments only for significant pairin…
fbemm updated
4 years ago
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@carriewright11
For now, I'm just gathering some thoughts and posting some links, I will continue to edit this and make some sort of outline and specific ideas.
## 03-Data_Privacy.Rmd
- [Me…
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Version: funannotate-1.8
Goal: Annotate assembled genome without RNA-seq data
I followed the "Genome Assembly Only" tutorial https://funannotate.readthedocs.io/en/latest/tutorials.html#genome-asse…
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Hi, I met the similar problem when I use stringtie: "Error: the input alignment file is not sorted! Alignments (965520) already found for chr1_1 !". I was working with the genome of Pinus tabliformis …
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Hi,
I am encountering a segmentation fault when running SSDetector on my data (See error below).
My genome is 2.4Gbp and the blast.tab file is 7.3 Gigabytes. Is it possible that the size of my dat…