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Related to https://github.com/umccr-illumina/ica_v2/issues/59
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Can we use both Nanopore and Illumina reads concatenated together into a single fastq file for the Mitochondrial genome assembly using Novoplasty? Or is Novoplasty specific for Illumina Data?
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Source: GEO
```yaml
label: GSE70770
title: Prostate cancer stratification using molecular profiles
accession: GSE70770
year: 2015
pubmed_id: [26501111, 26950096]
doi: 10.1016/j.ebiom.2015.07…
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I assume something like:
```
planemo run #workflow/github.com/iwc-workflows/sars-cov-2-pe-illumina-wgs-variant-calling/COVID-19-PE-WGS-ILLUMINA ...
```
Proposed by @wm75 some time ago.
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Hi dfguang,
I am trying to use pruge_dups for a mammalian assembly since the busco results came out with a high duplication rate:
C:84%[D:49%],F:7.5%,M:7.7%,n:3023
After running purge_dups as rec…
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Dear author,
There are very high ratio unmapped reads for **'too short'** and **'other'** while mapping to `T2T chrm13` genome, but **it worked for hg19 genome**. BWT, there is a **83% reads mappi…
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**Plugin Details**
- Name of tool: Illumina SAV
- Tool homepage: https://github.com/CenterForMedicalGeneticsGhent/MultiQC_SAV
- Tool description: replicates some plots and tables from illumina SA…
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Hi, thank you for putting spliceai_reforged together. Have you had any experience running it with more modern GPUs? I have a GTX 3060 Ti and have been unable to get it to work despite everything being…
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Hi, Illumina discontinued the earlier version of the EPIC array. Can you suggest a way to use RnBeads with EPIC v2.0 data?
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We discussed in one of the planning meeting if we would like to invite service providers such as Illumina to give a talk on their perspective around CWL support and deployment as a workflow language.
…