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Hi,
so the tool ran easily - thanks - but I am a little concerned with the results.
wc -l *.yacrd
1964840 iddm_report.yacrd
grep -c Chimeric iddm_report.yacrd
114108
grep -c NotBad idd…
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Hi, I'm in the process of trying to push some test data through the full pipeline and wondered if the following output I received was at all normal or likely a problem with how my data is set up, or h…
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Flo works but at the end dies due to some CDS extraction issue.
Any idea what I should do to fix this?
```
...
ln -s /data/nanopore/2741_MinION/flo_results/R64_genomic_cleaned.gff run/../R64_gen…
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Hi!
I was running megalodon v.2.1.1 (installed via conda) on my R9.4 reads from 1 MinION runs as well as 1 PromethION run (total roughly 100x coverage of my target genome).
I ran this command:
…
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Hi,
I'm working on a sequencing dataset produced by the Minion/nanopore method extracted from soil. My data is single-read and in fastaq format, and Im currently just working on the 29 sample set …
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Hi,
Let me preface the question by saying this isn't so much a feature request as it is a query with regards to existing feature capability. I am aware that Nanocompore was designed for the purpos…
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It would be good to have at least a simple summary report for the reconstructed consensus sequence. This should include:
* used version of poreCov
* used tools and versions within poreCov
* basic…
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Dear Malte,
I am part of the FULLFORCE project, and I'm facing problems with FFPA.
I am planning to run it on a local machine to make some tests, but I have an error at the beginning of the exec…
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Dear Woody,
I have a Nanopore long reads RNA-seq dataset on which I want to run PSIsigma. The output from PSIsigma contains only IR events in the *.sorted output file. I precise that I have only on…
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Hi,
I just quantified RNA-Seq reads generated with a Oxford Nanopore MinION sequencing device using kallisto 0.46.0. The est_counts reflected well the number of reads I observed for some example gene…