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@jakobnissen @CiaranOMara
So julia 1.5 now means structs that have references to mutable are now stack-allocated.
I'm very excited about this. As you know, every `LongSequence` are mutable and e…
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Any idea what this error could be about? Or if it would impact the output fasta?
Thanks,
KF
gfatools gfa2fa asm.p_ctg.gfa > p.contigs.fasta
[W::gfa_fix_utg] one or multiple A-lines on 'utg00…
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**Is your feature request related to a problem? Please describe.**
For many organism, their genomes are haploid. How to use medaka to call their variants?
**Describe the solution you'd like**
I a…
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Hello,
It seems Loter will consume lots of memory with the increase of number of SNPs and the number of individuals. Also, It seems that the memory usage also related with the number of threads? …
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Hi,
Thanks for the nice software. I've been using Octopus for microbial samples in polyclone mode so far with good success. I have two questions that I couldn't find an answer for either in the pre…
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Hi,
I have two question regarding deduplication of CanuTrio assemblies.
I have haplotype assemblies after CanuTrio that according to BUSCO are complete (97%) but 15% duplicated.
It seems that dupli…
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I made the code changes as suggested: https://github.com/marbl/canu/issues/1693#issuecomment-626752639
Then I ran the same PBS script with updated Canu code:
```
#!/bin/bash
#PBS -P OSR
#PBS -N…
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Hello, @fritzsedlazeck
I'm having trouble in using --cluster option of the sniffles
I can't find the variant phasing information in VCF files and BEDPE files
the command I used is as foll…
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Hi Jim,
First of all, thank you very much for making this nice function!
I am trying to apply it to my project right now but there is one major error that I can not fix, although which may not d…
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Hi,
I've been hitting this error on a couple of bam files that I have tried. I attached a screenshot of the area causing the error in igv viewer. Input and error are below. The file already has read …