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This is a feature request (as discussed with @bluegenes earlier today) to have the k-mers that correspond to the hash values also returned when doing a `sourmash sketch`. I was made aware of [sourmash…
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Hello, arangrhie,
Merqury has proven to be an excellent tool for evaluating genomes.
I currently possess a haplotype-resolved genome from an autotetraploid species, which includes four haplotype…
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I am trying to build a kmer db using the k-mer output from KMC but I keep getting an error.
This is the command I am running:
```
./kmer-db build -from-kmers ./KMC.list ./output/KMC_out.db
```
…
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Hi,
I'm trying to run EPGA2 but there is a problem with glibc. I've followed the steps provided in readme to compile and run but in the runtime i got this error.
09-13 / 19:38:55 [-----------…
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Leon compression crashes on some data. Example data:
[leon-repro-1.fa.gz](http://kirill.med.u-tokai.ac.jp/data/temp/leon-repro-1.fa.gz) (784 MB archive, inside is a 2.8 GB file).
Command to repr…
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We classified metagenomic reads using a custom database.
This is the Kraken2 classification for an example paired read (from the .krak file)
taxid 2161 83|86 0:42 2161:5 0:2 |:| 0:1 2161:1 0:3 2…
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Hello,
I'm trying to use the STAT tools to build a database from fasta sequences, and then using it to do metagenomics/taxonomic analyses.
So I'm following the tutorial in the build_db_and_run.sh …
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I installed Merqury (v1.3) through conda. After running merqury under conda environment:
`merqury.sh $WD/Carex_hic.meryl $REF Carex_pctg`
I got the most expected outputs such as qv, completeness, an…
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Hi Folks,
Just checking in to see if extremely long runtimes are expected in the connection stage, I currently have a process that has been running for over 3 days! At this rate, it will be weeks b…
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High abundance kmers align to a Haplochromine instance of a [fugu LINE element sequence](http://www.ncbi.nlm.nih.gov/nucleotide/338899919) (GBID [AB601475.1](http://www.ncbi.nlm.nih.gov/pubmed/1002305…