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Description
Sub-lineage of: B.1.617.2
(current lineage designation by Pangolin, no AY. designation yet) with 5
additional mutations. These additional def…
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The original NetSurfP-2.0 dataset contains 10837 protein sequences. But only 10791 proteins were used in this paper. Is there any additional fitering operation here?
NetSurfP-2.0
> A structural …
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Hi! I am using the `biozernike` library to perform some comparisons between PDB structures. I would like to do some calculations between subsets of assemblies and get some distance/similarity scores. …
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Talking with @brianjimenez
We thought there could be four new tools to directly select for protein, nucleic, and carbohydrates, regardless of the chain where they sit. We could use the residue nam…
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Hi again,
I'm using the following sequence in my library fasta file (it's an example from [wikipedia](https://en.wikipedia.org/wiki/FASTA_format#Original_format_&_overview)):
```
>gi|5524211|gb|A…
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Something we've run into in the Python track when implementing new exercises is that there is occasionally some confusion about what topics are appropriate for a given exercise. While some exercises m…
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Not entirely sure if it's possible, but I think mapping out the SARS-CoV-2 DNA sequencing would be something to be able to do and may open up Constellation to different fields that may not have looked…
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I think there is a serious problem when `UnicodeEncodeError` is triggered because `'latex' codec can't encode character`:
```
UnicodeEncodeError: 'latex' codec can't encode character '\ufb03' in pos…
RMeli updated
3 years ago
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Hi, here is the code I used:
```
pro = Protein('6TOL', ligand_ref='201')
```
which raised an error:
```
parmed.exceptions.FormatNotFound: Could not identify file format
```
kexul updated
3 years ago
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> Disclaimer: My area of expertise does not lend well to me suggesting *how* to make things ASIC resistant. I hope there are some informed opinions floating around out there who can help fill in the …