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The annotation approach added in #282 seems to be working out pretty well, and I had a few thoughts about how to extend and/or regularize it, as well as how to evaluate it.
My major realization is …
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Hi,
Everything runs very well and no error message is given. However, the final result files are just missing. I tried it twice on an Arabidopsis thaliana data set.
PacBio reads from this study:…
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I'm trying to run BCALM on a very large database and I keep getting errors that look like:
```
mem: [ 100, 91622, 92822] MB EXCEPTION: Pool reserve() failed for 576716800000 (+ 1600 extra for 36 cor…
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Hi all,
Apologies, I have seen related issues but I cannot seem to make it work. I am running `kb ref` to generate a nac index from RefSeq annotations on Hg19.
I am running `kb_python` 0.28.2 insta…
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Is there someone working on this ?
The only reference I found is on the [GATB Global Architecture page](https://gatb.inria.fr/gatb-global-architecture/) :
> Wrappers for other languages will be av…
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Hi,
I'm running the following line: abyss-pe name=test_pe k=96 B=2G in='out_R1_001.fastq out_R2_001.fastq'
Despite getting stats on contigs:
n n:500 L50 min N75 N50 …
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Hi,
I am doing the aTRAM, but after running the atram.py, it reported the error like below, could you please help take a loot what is going on? Thank you very much
2020-11-16 02:16:33 INFO : ##…
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Hey there,
I'm exploring using verkko to assemble some relatively large satellites and segmental duplications in a targeted fashion.
Since the typical HiFi reads + UL reads haven't been sufficie…
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I have noticed that the chloroplast and mitochondrion do not assemble with hifiasm. I am not expecting to get the full plastid assembled correctly, but I don't see anything. When I align the corrected…
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Hello,
i have ann issue with an empty output after polishing with racon. When i run racon on an assembly and a polishing file i get a empty output although it seems like the tool finishes without an…