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*Please include a short description of problem here*
how to get codes for developing community modelling of probiotics in MATLAB. also how to simulate this in recon 3d ?
**I hereby confirm that I ha…
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It seems that the ribosomal_models are not available from the provided link anymore:
```
wget ftp://ftp.ebi.ac.uk/pub/databases/metagenomics/pipeline-5.0/ref-dbs/rfam_models/ribosomal_models/RF*.c…
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HI,
Thanks for sharing the code, we have read your paper, excellcent work. We hope to use your methods to analysis our metagenomic datasets, but we meet some challenges:
We only have 5 metagenoic samp…
yxxue updated
8 years ago
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I am in the process of determining whether sourmash is the right tool for my metagenomic analyses. I am mostly using ONT data at the moment. Similar to previous posts (e.g. https://github.com/sourmash…
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Hello community,
I recently performed a metagenomic analysis on sequencing data generated from a zymomock community by Nanopore Sequencing (MinION) and wanted to assess the sequencing bias by using…
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Hi,
CONTEXT: metagenomic analyses using whole genome seq oxford nanopore data. Samples (15) collected in caves.
I want to just focus on plants and bats so I built two different custom databases mo…
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I'm seeing runs with truncated bam/log files. The version is 0.5.1 and the command being run is:
dorado duplex --verbose sup,5mC_5hmC,6mA xad.pod5 > xad.bam 2> xad.log &
[2023-12-29 07:46:27.334…
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Hi,
I'm trying to look at my metagenomic data from an ancient millet sample. This is my first bioinformatics project and I've had no training
so I apologise if my question is a bit basic.
I…
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Hi,
I am calling SNPs in several dataset. I am giving a try to BCFtools mpileup and call to wgs-data. I was wondering if I could use the same approach with pool-seq data?
I could control for the plo…
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I have been running a few rounds of kraken2 on some metagenomics data that has a high fraction of mouse reads that are not usefull for the project. So to improve processing time I disgaurded all the r…