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e.g. the query
```SPARQL
SELECT DISTINCT ?item ?itemLabel ?_PubMed_ID
WHERE
{
?item wdt:P31 wd:Q13442814 ;
rdfs:label ?itemLabel .
OPTIONAL { ?item wdt:P698 ?_PubMed_ID. }
FIL…
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Hi team
Encountered another error. Not sure how to go about this.
I am using [this imzml](https://zenodo.org/record/1560646#.YVK1o7gzbbi) with the uniprot_mouse.fasta proteome
```
Job in er…
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Hello,
I wanted to try the model on my mgf files. Since I don't have any peptide sequences and want to predict new ones, I dont have a peptide or sequence parameter in my mgf files. I tried running…
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I'm getting a mysterious pickling error when trying to use ms2rescore.feature_generators.ms2pip.MS2PIPFeatureGenerator. The error seems to be caused by having [UNIMOD:nn] variable mods in the ProForma…
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Hi Michael,
While adding support for Sage Parquet result file output to psm_utils, I noticed some discrepancies between the TSV and the Parquet output. Apart from the different order of columns, so…
RalfG updated
8 months ago
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[keesh ](https://sourceforge.net/u/keesh0/profile/)- 1 second ago
Jimmy,
We employ Comet in a clinical Proteomics pipeline at Mayo.
We would like deterministic results to adhere to great patient…
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As mentioned here in https://github.com/compomics/searchgui/issues/107 it would be great if we can pass PeptideShaker outputs to moFF via CLI. We could either pass the zip file or a special PS output …
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The data returned by the [residue-pairs](https://www.ebi.ac.uk/pride/ws/archive/crosslinking/docs#/PDB-Dev/get_psm_level_residue_pairs_pride_ws_archive_crosslinking_pdbdev_projects__project_id__residu…
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Add the option to annotate stretches in the peptide sequence with meaning for the end user. Solely for generating nice graphs. To do this a couple of buttons should be added after the ion legend row, …
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Hello,
I am running a Comet search with SearchGUI on a file containing 100 spectra and use Peptide Shaker (tried different version 3.0.1, 3.0.5 and 2.2.25) in order to visualize the results and obt…